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View Structure Prediction Details

Protein: GFD2
Organism: Saccharomyces cerevisiae
Length: 566 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GFD2.

Description E-value Query
Range
Subject
Range
GFD2_YEAST - Good for full DBP5 activity protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GF...
GFD2 - Protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation
0.0 [1..566] [1..566]
SPAC2C4.08 - conserved fungal protein
YEY8_SCHPO - Uncharacterized nucleolar protein C2C4.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
7.0E-64 [284..470] [73..227]

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Predicted Domain #1
Region A:
Residues: [1-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVQKMVRDN SNNGSDKSVH WERRNNNGAG PRYRSRSGNT GALATKLSNG TLSVRGLVKD  60
   61 RTGSGKIAGC VEAFLDARTQ LNTPWDRAKC NWLDQIDYYV QLRKTAFSKE LDQLRKPMID 120
  121 AYVAEMRQKF DASYGQSRAQ LEAKLAQVDS EWHMVHGDVH AKLEKLVEER RFLKRLSDTI 180
  181 VPPRSKRSQR LSPLTKEDRA NCICPQPKGM SDTAWFEAIQ KKMLGMNGTI KLLETEQKLL 240
  241 ADEKNSVRKT FWPMVEAHS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [260-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSNEFAYLEK CIRLMASQRA ICFCLDIEAF ETNQNVITEI GISIYDPREN MVPSMVPITK  60
   61 NYHLIIEESL ELRNQKWVCD YKDCYLLGES YVLSLKECVH FIQSLINYYL VPVTEEDKTW 120
  121 SRAFVGHHVS GDLKWLETIG VKFPGRGYEG HLDHTLLLAE TPGDLDVFIL DTEQFYRKSY 180
  181 GEKGSSLGKI LRLFEIPHAF LHNAGNDAYY TLHLFMKFCD VNFRKISGMD DVLKVMGQVK 240
  241 VWGERDVR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [508-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPKVVPMSYA ISIEEAVKNR TYRKGVKSSR KERVCQTEFG GLTYFGTAKD AFTSTLPTH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle