| Protein: | GFD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 566 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GFD2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..566] | [1..566] |
|
|
7.0E-64 | [284..470] | [73..227] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MQVQKMVRDN SNNGSDKSVH WERRNNNGAG PRYRSRSGNT GALATKLSNG TLSVRGLVKD 60
61 RTGSGKIAGC VEAFLDARTQ LNTPWDRAKC NWLDQIDYYV QLRKTAFSKE LDQLRKPMID 120
121 AYVAEMRQKF DASYGQSRAQ LEAKLAQVDS EWHMVHGDVH AKLEKLVEER RFLKRLSDTI 180
181 VPPRSKRSQR LSPLTKEDRA NCICPQPKGM SDTAWFEAIQ KKMLGMNGTI KLLETEQKLL 240
241 ADEKNSVRKT FWPMVEAHS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [260-507] |
1 11 21 31 41 51
| | | | | |
1 RSNEFAYLEK CIRLMASQRA ICFCLDIEAF ETNQNVITEI GISIYDPREN MVPSMVPITK 60
61 NYHLIIEESL ELRNQKWVCD YKDCYLLGES YVLSLKECVH FIQSLINYYL VPVTEEDKTW 120
121 SRAFVGHHVS GDLKWLETIG VKFPGRGYEG HLDHTLLLAE TPGDLDVFIL DTEQFYRKSY 180
181 GEKGSSLGKI LRLFEIPHAF LHNAGNDAYY TLHLFMKFCD VNFRKISGMD DVLKVMGQVK 240
241 VWGERDVR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [508-566] |
1 11 21 31 41 51
| | | | | |
1 EPKVVPMSYA ISIEEAVKNR TYRKGVKSSR KERVCQTEFG GLTYFGTAKD AFTSTLPTH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.473 | a.159.2 | FF domain |
| View | Download | 0.473 | a.159.2 | FF domain |
| View | Download | 0.453 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.453 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.378 | a.4.1 | Homeodomain-like |
| View | Download | 0.378 | a.4.1 | Homeodomain-like |
| View | Download | 0.374 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.374 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.347 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.347 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.337 | a.4.1 | Homeodomain-like |
| View | Download | 0.302 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.282 | a.135.1 | Tetraspanin |
| View | Download | 0.277 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.275 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.270 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.268 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.260 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.260 | a.77.1 | DEATH domain |
| View | Download | 0.252 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.243 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.240 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.239 | a.65.1 | Annexin |
| View | Download | 0.230 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.229 | a.4.1 | Homeodomain-like |
| View | Download | 0.226 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.225 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.221 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.217 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.203 | d.58.17 | Metal-binding domain |
