YRC Public Data Repository - Protein Structure Prediction

Protein:	DCC1
Organism:	Saccharomyces cerevisiae
Length:	380 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCC1.

Description	E-value	Query Range	Subject Range
gi\|7485548, gi\|3... - pir\|\|T01585 probable RING zinc finger protein homolog At2g44580 [imported] - Arabidopsis thaliana, ...	448.0	[0..1]	[370..19]
gi\|44980418 - gi\|44980418\|gb\|AAS50351.1\| AAL015Wp [Ashbya gossypii ATCC 10895] gi\|45184809, gi\|... - gi\|45184809\|ref\|NP_982527.1\| AAL015Wp [Ashbya gossypii ATCC 10895], gi\|44980418\|gb\|AAS50351.1\| AAL01...	433.0	[0..1]	[380..1]
gi\|109087339 - gi\|109087339\|ref\|XP_001097551.1\| PREDICTED: similar to defective in sister chromatid cohesion homolo...	414.0	[0..14]	[380..42]
gi\|123995559, gi... - gi\|123995559\|gb\|ABM85381.1\| defective in sister chromatid cohesion homolog 1 (S. cerevisiae) [synthe... gi\|12654937, gi\|... - gi\|37182850\|gb\|AAQ89225.1\| KRTR9337 [Homo sapiens], gi\|13129096\|ref\|NP_076999.1\| defective in sister...	414.0	[0..14]	[380..42]
gi\|73974559 - gi\|73974559\|ref\|XP_851311.1\| PREDICTED: similar to defective in sister chromatid cohesion homolog 1 ...	395.0	[0..17]	[380..44]
gi\|62652428 - gi\|62652428\|ref\|XP_216934.3\| PREDICTED: similar to defective in sister chromatid cohesion homolog 1 ...	389.0	[0..14]	[380..57]
gi\|76635010 - gi\|76635010\|ref\|XP_586552.2\| PREDICTED: similar to defective in sister chromatid cohesion homolog 1 ...	384.0	[0..17]	[380..41]
DCC1_MOUSE - Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1	382.0	[0..14]	[380..48]
CG11788-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11788 (CG11788, FBgn0034495). It is a prote...	371.0	[0..7]	[380..46]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINLHSAPE YDPSYKLIQL TPELLDIIQD PVQNHQLRFK SLDKDKSEVV LCSHDKTWVL  60
   61 KQRKHSNTVL LMREFVPEQP ITFDETLLFG LSKPYMDVVG FAKTESEFET RETHGELNLN 120
  121 SVPIYNGELD FSDKIMKRSS TKVIGTLEEL LENSPCSALE GISKWHKIGG SVKDGVLCIL 180
  181 SQDFLFKALH VLLMSAMAES LDLQHLNVED THHAVGKDIE DEF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [224-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPYTREIIET VLNKFAVQEQ EAENNTWRLR IPFIAQWYGI QALRKYVSGI SMPIDEFLIK  60
   61 WKSLFPPFFP CDIDIDMLRG YHFKPTDKTV QYIAKSTLPM DPKERFKVLF RLQSQWDLED 120
  121 IKPLIEELNS RGMKIDSFIM KYARRKRLGK KTVVTSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits