| Protein: | RGD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 666 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..666] | [1..666] |
|
|
0.0 | [4..666] | [64..714] |
|
|
3.0E-88 | [4..666] | [7..695] |
|
|
3.0E-84 | [101..664] | [15..583] |
|
|
4.0E-84 | [33..664] | [43..704] |
|
Region A: Residues: [1-435] |
1 11 21 31 41 51
| | | | | |
1 MEETAKKPAS ATVSAKSSHD GGTDDLAHLF STPEIKKVLN SDVAINALLS RLKQSLLTCE 60
61 EFMKFIRKKY AFEEEHVQEL SKQYKHFFNI QGSTNSSLKK MIHEVLGFDG KMAQVKQSYI 120
121 TALQKMYSEI SSLLLTMTKL RKSVKENSKR LEKDVSDAIH SAEKAQSRYN SLCQDWDKLR 180
181 MTDPTKTKLT LRGSKTTKEQ EEELLRKIDN ADLEYKQKVD HSNSLRNTFI TKERPRIVQE 240
241 LKDLILEIDT AMTIQLQKYT IWTENLVLNT GVTISPLDST KSMKSFAGSV SNERDLYSFL 300
301 NKYNQTGKHS LLINKNLIPV SYKKHPSMNH GQKNKSPPKF AVDPSRNSIP KRMISTHNES 360
361 PFLSSSSNTA AVPNANLNSA TPSLNTNKQL PPTMASSISS TSNAAGAMSP SSSIVTSDTT 420
421 SSITKTLDPG NNSPQ
|
| Detection Method: |  |
| Confidence: | 14.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.43584893484993 | bayes_pls_golite062009 |
| protein binding | 1.87308005875135 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.48820833936343 | bayes_pls_golite062009 |
| signal transducer activity | 0.546501086239797 | bayes_pls_golite062009 |
| molecular transducer activity | 0.546501086239797 | bayes_pls_golite062009 |
| GTPase binding | 0.50066793947946 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.459881864914566 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.456472132383968 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.180886944097381 | bayes_pls_golite062009 |
| small GTPase binding | 0.0531578648468707 | bayes_pls_golite062009 |
|
Region A: Residues: [436-559] |
1 11 21 31 41 51
| | | | | |
1 IPEELINSLD SDRPISHIQT NNNMPPGVQK NFKTFGVPLE SLIEFEQDMV PAIVRQCIYV 60
61 IDKFGLDQEG IYRKSANVLD VSKLKEEIDK DPANISMILP SKPHSDSDIY LVGSLLKTFF 120
121 ASLP
|
| Detection Method: | |
| Confidence: | 166.70927 |
| Match: | 1rgp__ |
| Description: | p50 RhoGAP domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Rho GTPase activator activity | 4.58620967349979 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 3.29568423512865 | bayes_pls_golite062009 |
| GTPase regulator activity | 2.70614727793157 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 2.68579854252375 | bayes_pls_golite062009 |
| binding | 2.36195429973813 | bayes_pls_golite062009 |
| actin binding | 2.22794146985308 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 2.06038764955701 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.05040620031468 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.9750017471254 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.95738547986197 | bayes_pls_golite062009 |
| protein binding | 1.29100556128076 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.09070479183477 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.958295643211986 | bayes_pls_golite062009 |
| GTPase activator activity | 0.717730683557543 | bayes_pls_golite062009 |
| microfilament motor activity | 0.70891877343852 | bayes_pls_golite062009 |
| signal transducer activity | 0.648419213388211 | bayes_pls_golite062009 |
| molecular transducer activity | 0.648419213388211 | bayes_pls_golite062009 |
| actin filament binding | 0.613502134123252 | bayes_pls_golite062009 |
| motor activity | 0.55239878540339 | bayes_pls_golite062009 |
| diacylglycerol binding | 0.515403424540209 | bayes_pls_golite062009 |
| tubulin binding | 0.477476507404761 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.36751853312336 | bayes_pls_golite062009 |
| transcription regulator activity | 0.348246993470003 | bayes_pls_golite062009 |
| enzyme activator activity | 0.298334474872045 | bayes_pls_golite062009 |
|
Region A: Residues: [560-666] |
1 11 21 31 41 51
| | | | | |
1 DSVLPKALSS EIKVCLQIED PTTRKNFMHG LIYNLPDAQY WTLRALVFHL KRVLAHEAQN 60
61 RMNLRALCII WGPTIAPANP DDANDVNFQI MAMEVLLEVS DQAFEPE
|
| Detection Method: | |
| Confidence: | 166.70927 |
| Match: | 1rgp__ |
| Description: | p50 RhoGAP domain |
| Matching Structure (courtesy of the PDB): |
|
