| Protein: | ARC40 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 384 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARC40.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..383] | [910..1247] |
|
|
0.0 | [3..384] | [1142..1481] |
|
Region A: Residues: [1-384] |
1 11 21 31 41 51
| | | | | |
1 MSFSNSKDKS VVAVYKLVKA PIYSHCFSQD KSILAVTCET DCLVYRVSNN TPPVLFATLK 60
61 DHDKTITAVD ISIHGRIVTC SQDRNAYVWE PLSDGTYKPT LVLLRINRAA TSVTWAPNGY 120
121 KFAVGSSARI IAVCYYEHEN NWWVSKHIKK PIKSTINCLS WHANGVLLAA GGTDGFMRVF 180
181 SGFIKGLDSK ESVAGSPWGQ KFPFGCLIRE WYQGSYIHDV EWRSQMERIA YVAHDGTLNV 240
241 VDYQSPVQSV NAPEGLPYRS LVWINDHEIV CGGYSCHPVL FSEASEGWKF AKNLDKSDNN 300
301 KSSALTASGN TDELSGNNDE SSTFGISALR KFKELDLKGK VSTDVQESAH ENAIVELRPF 360
361 AESNGQITQV SSCGLDGKIV IYTI
|
| Detection Method: |  |
| Confidence: | 659.30103 |
| Match: | 1k8kC_ |
| Description: | Arp2/3 complex 41 kDa subunit ARPC1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| binding | 1.79788997337153 | bayes_pls_golite062009 |
| dynein binding | 1.69349714290074 | bayes_pls_golite062009 |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| tubulin binding | 0.968047176592527 | bayes_pls_golite062009 |
| microtubule binding | 0.834073483714259 | bayes_pls_golite062009 |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| 0.45054027253231 | bayes_pls_golite062009 | |
| myosin II binding | 0.33142771724387 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 0.231534552000461 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
