| Protein: | SDS24 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 527 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDS24.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-74 | [1..527] | [1..527] |
|
|
8.0E-50 | [2..426] | [133..565] |
|
|
1.0E-49 | [2..399] | [3..375] |
|
|
2.0E-49 | [2..426] | [133..562] |
|
|
5.0E-49 | [2..420] | [60..457] |
|
|
4.0E-47 | [68..424] | [403..731] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MASTSNTFPP SQSNSSNNLP TSRHASIVEM LSTPPLLPHV QVNDTDDKEQ PEESTPPTAT 60
61 AAAPGPGCAA TPAPLRDEKP QFKLSAVPMT QTPSQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.378 | a.3.1 | Cytochrome c |
| View | Download | 0.313 | a.77.1 | DEATH domain |
| View | Download | 0.283 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.366 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.309 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.378 | a.3.1 | Cytochrome c |
| View | Download | 0.366 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.313 | a.77.1 | DEATH domain |
| View | Download | 0.309 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.283 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.250 | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.248 | a.26.1 | 4-helical cytokines |
| View | Download | 0.224 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.211 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.206 | d.52.2 | GMP synthetase C-terminal dimerisation domain |
|
Region A: Residues: [96-197] |
1 11 21 31 41 51
| | | | | |
1 CLSCVHAQKW QHIPLSQLIE QNKLIFVPGS ISVEEAFNTL IKYHLNSIPV ESFPGDMNCF 60
61 TFDYNDLNSY LLLVLNKITV SNKQLTADCQ NGKPVPVGEM VK
|
|
Region B: Residues: [333-527] |
1 11 21 31 41 51
| | | | | |
1 HVTRTSQYPL LHKTCRHFIS VILNSRGLET GKDSFPIFHV YPSSSLARTL AKLVATKSHR 60
61 LWIVQPPESS TSASSTNLTA ANTAANAVSA TAQSSANGAT PMSKSSSSTS LNSHSPLMTA 120
121 MEDPPSPRSS AIAIPPPSPA SSTNTPNLFE KEYRTGKLIG VVSLTDIINL LARKQTGNKE 180
181 VDPQSARRQR GSIAM
|
| Detection Method: | |
| Confidence: | 35.045757 |
| Match: | 1zfjA_ |
| Description: | Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 0.961062314616209 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.807029018941177 | bayes_pls_golite062009 |
| binding | 0.804248460382476 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.640881170978843 | bayes_pls_golite062009 |
| protein binding | 0.5290109527055 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.525366315833255 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.440262824681055 | bayes_pls_golite062009 |
|
Region A: Residues: [198-332] |
1 11 21 31 41 51
| | | | | |
1 LTPKNPFYKL PENESLSTVM GILGSGVHRV AITNEEMTKV KGILSQRRLI KYLWDNARSF 60
61 TSLEPLLNSS LQDLHIGVLN IQSKPTSRQS RVISIQGEEP LIMGLYKMHV ERISSIAVID 120
121 KQGNLLGNIS VTDVK
|
| Detection Method: | |
| Confidence: | 35.045757 |
| Match: | 1zfjA_ |
| Description: | Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
