YRC Public Data Repository - Protein Structure Prediction

Protein:	YPC1
Organism:	Saccharomyces cerevisiae
Length:	316 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPC1.

Description	E-value	Query Range	Subject Range
gi\|190407868 - gi\|190407868\|gb\|EDV11133.1\| alkaline ceramidase YDC1 [Saccharomyces cerevisiae RM11-1a] YDC1 - Alkaline dihydroceramidase, involved in sphingolipid metabolism; preferentially hydrolyzes dihydroce... gi\|207340550 - gi\|207340550\|gb\|EDZ68866.1\| YPL087Wp-like protein [Saccharomyces cerevisiae AWRI1631] YDC1_YEAST - Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDC1 PE=1 SV=1 gi\|151942710 - gi\|151942710\|gb\|EDN61056.1\| alkaline dihydroceramidase [Saccharomyces cerevisiae YJM789]	383.0	[0..3]	[308..2]
gi\|62640940, gi\|... - gi\|62640940\|ref\|XP_574497.1\| PREDICTED: similar to Alkaline phytoceramidase (aPHC) (Alkaline ceramid...	330.0	[0..9]	[277..140]
gi\|157071806, gi... - gi\|164427589\|ref\|XP_965356.2\| hypothetical protein NCU02969 [Neurospora crassa OR74A], gi\|157071806\|... gi\|16945385 - gi\|16945385\|emb\|CAD11799.1\| conserved hypothetical protein [Neurospora crassa]	328.0	[0..1]	[297..1]
gi\|49526348, gi\|... - gi\|50289217\|ref\|XP_447039.1\| unnamed protein product [Candida glabrata], gi\|49526348\|emb\|CAG59972.1\|... gi\|49526348 - gi\|49526348\|emb\|CAG59972.1\| unnamed protein product [Candida glabrata]	312.0	[0..4]	[303..3]
ACER3_MOUSE - Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1	304.0	[0..9]	[277..3]
gi\|109108005 - gi\|109108005\|ref\|XP_001088478.1\| PREDICTED: phytoceramidase, alkaline [Macaca mulatta]	301.0	[0..9]	[277..3]
ACER3 - alkaline ceramidase 3 gi\|114639456 - gi\|114639456\|ref\|XP_001175032.1\| PREDICTED: phytoceramidase, alkaline isoform 3 [Pan troglodytes]	300.0	[0..9]	[277..3]
gi\|73987895 - gi\|73987895\|ref\|XP_849760.1\| PREDICTED: similar to Alkaline phytoceramidase (aPHC) (Alkaline ceramid...	290.0	[0..9]	[277..3]
gi\|32419427, gi\|... - gi\|32419427\|ref\|XP_330157.1\| hypothetical protein ( hypothetical protein B7F18.50 [imported] - Neuro... gi\|85117994 - gi\|85117994\|ref\|XP_965356.1\| hypothetical protein	283.0	[0..1]	[252..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFRWNYPE SSVPGVWGET TSTIDWCEEN YVVSPYIAEW SNTLTNSVFI LSAIYTTYSA  60
   61 YKNKLEKRFL LIGFGYGLVG VGSWLFHMTL KYRFQLLDEL PMIYAMCIPT WSLVCEAKEA 120
  121 LLNGDNHKKV PLFEQIFIGV IIGLAVTTAS ILYVIYKNVD IHQILFGVQI VVVAATAGSL 180
  181 TYRYVH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLAKRNLKA SMALGAILFL SGYISWLLDI HYCSFWVHVR RSILALPLGV LLEPHGWWHI  60
   61 LTGMGIYFYI VSLEHLRVIT LNVSCNYQFI WRWKVFPELI WKGRKPSTRY SLELFGPYVE 120
  121 DQSIEVKKEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.893	N/A	N/A	c.52.1	Restriction endonuclease-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits