YRC Public Data Repository - Protein Structure Prediction

Protein:	UMP1
Organism:	Saccharomyces cerevisiae
Length:	148 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UMP1.

Description	E-value	Query Range	Subject Range
gi\|9828633 - gi\|9828633\|gb\|AAG00256.1\|AC002130_21 F1N21.7 [Arabidopsis thaliana]	186.0	[0..26]	[148..12]
gi\|10834776 - gi\|10834776\|gb\|AAG23819.1\|AF275807_1 PNAS-110 [Homo sapiens]	180.0	[0..11]	[147..8]
POMP_BOVIN - Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1	173.0	[0..11]	[148..8]
gi\|27691986, gi\|... - gi\|27691986\|ref\|XP_213700.1\| PREDICTED: similar to Pomp CG9324-PA [Rattus norvegicus], gi\|171847036\|...	172.0	[0..11]	[148..8]
Pomp-PA - The gene Pomp is referred to in FlyBase by the symbol Dmel\Pomp (CG9324, FBgn0032884). It is a prote... gi\|220942654, gi... - gi\|220952900\|gb\|ACL88993.1\| Pomp-PA [synthetic construct], gi\|220942654\|gb\|ACL83870.1\| Pomp-PA [synt...	172.0	[0..21]	[148..8]
gi\|2982245, gi\|2... - gi\|2982245\|gb\|AAC32110.1\| hypothetical protein [Picea mariana], pir\|\|T51959 hypothetical protein [im...	171.0	[0..22]	[148..8]
gi\|57104896 - gi\|57104896\|ref\|XP_534518.1\| PREDICTED: similar to CG9324-PA [Canis familiaris]	170.0	[0..11]	[148..8]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVPQDTFK SQVSTDQDKS VLSSAVPSLP DTLRQQEGGA VPLSTQLNDR HPLESTLKNW  60
   61 ETTQRQRQME QYRQIFGIAE PMKRTMEMEI VNRTDFNPLS TNGSIHRDIL LNKECSIDWE 120
  121 DVYPGTGLQA STMVGDDVHS KIEKQLGI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.522879
Match:	PF05348.2
Description:	No description for PF05348.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits