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View Structure Prediction Details

Protein: UMP1
Organism: Saccharomyces cerevisiae
Length: 148 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UMP1.

Description E-value Query
Range
Subject
Range
gi|9828633 - gi|9828633|gb|AAG00256.1|AC002130_21 F1N21.7 [Arabidopsis thaliana]
186.0 [0..26] [148..12]
gi|10834776 - gi|10834776|gb|AAG23819.1|AF275807_1 PNAS-110 [Homo sapiens]
180.0 [0..11] [147..8]
POMP_BOVIN - Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1
173.0 [0..11] [148..8]
gi|27691986, gi|... - gi|27691986|ref|XP_213700.1| PREDICTED: similar to Pomp CG9324-PA [Rattus norvegicus], gi|171847036|...
172.0 [0..11] [148..8]
Pomp-PA - The gene Pomp is referred to in FlyBase by the symbol Dmel\Pomp (CG9324, FBgn0032884). It is a prote...
gi|220942654, gi... - gi|220952900|gb|ACL88993.1| Pomp-PA [synthetic construct], gi|220942654|gb|ACL83870.1| Pomp-PA [synt...
172.0 [0..21] [148..8]
gi|2982245, gi|2... - gi|2982245|gb|AAC32110.1| hypothetical protein [Picea mariana], pir||T51959 hypothetical protein [im...
171.0 [0..22] [148..8]
gi|57104896 - gi|57104896|ref|XP_534518.1| PREDICTED: similar to CG9324-PA [Canis familiaris]
170.0 [0..11] [148..8]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVPQDTFK SQVSTDQDKS VLSSAVPSLP DTLRQQEGGA VPLSTQLNDR HPLESTLKNW  60
   61 ETTQRQRQME QYRQIFGIAE PMKRTMEMEI VNRTDFNPLS TNGSIHRDIL LNKECSIDWE 120
  121 DVYPGTGLQA STMVGDDVHS KIEKQLGI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 66.522879
Match: PF05348.2
Description: No description for PF05348.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.539 N/A N/A a.246.2 Description not found.
View Download 0.482 N/A N/A a.26.1 4-helical cytokines
View Download 0.454 N/A N/A a.1.1 Globin-like
View Download 0.399 N/A N/A a.246.1 Description not found.
View Download 0.338 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.338 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.275 N/A N/A a.39.1 EF-hand
View Download 0.261 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.249 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle