| Protein: | PBY1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 753 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBY1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..753] | [1..753] |
|
|
2.0E-99 | [361..722] | [37..390] |
|
|
6.0E-96 | [359..747] | [12..383] |
|
|
5.0E-90 | [358..747] | [82..458] |
|
|
3.0E-84 | [370..739] | [36..391] |
|
|
5.0E-81 | [3..308] | [16..286] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MRVLITNDDG PLSDQFSPYI RPFIQHIKRN YPEWKITVCV PHVQKSWVGK AHLAGKNLTA 60
61 QFIYSKVDAE DNTFWGPFIQ PQIRSENSKL PYVLNAEIPK DTIEWILIDG TPASCANIGL 120
121 HLLSNEPFDL VLSGPNVGRN TSAAYITSSG TVGGAMESVI TGNTKAIAIS WAYFNGLKNV 180
181 SPLLMEKASK RSLDVIKHLV KNWDPKTDLY SINIPLVESL SDDTKVYYAP IWENRWIPIF 240
241 N
|
| Detection Method: |  |
| Confidence: | 100.69897 |
| Match: | 1j9jA_ |
| Description: | SurE homolog TM1662 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [242-374] |
1 11 21 31 41 51
| | | | | |
1 GPHINLENSF AEIEDGNESS SISFNWAPKF GAHKDSIHYM DEYKDRTVLT DAEVIESEMI 60
61 SVTPMKATFK GVNHLLGELK LTEEENNLSK TNNLIVVSID PMEYIYKPLT HALKKYLPQV 120
121 EIVSNLPEFD NGG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.528 | a.1.1 | Globin-like |
| View | Download | 0.525 | a.74.1 | Cyclin-like |
| View | Download | 0.598 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.540 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.443 | a.74.1 | Cyclin-like |
| View | Download | 0.419 | a.24.3 | Cytochromes |
| View | Download | 0.418 | a.26.1 | 4-helical cytokines |
| View | Download | 0.409 | a.29.2 | Bromodomain |
| View | Download | 0.405 | d.110.4 | SNARE-like |
| View | Download | 0.392 | a.1.1 | Globin-like |
| View | Download | 0.389 | a.40.2 | X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |
| View | Download | 0.379 | a.19.1 | Fertilization protein |
| View | Download | 0.375 | a.7.1 | Spectrin repeat |
| View | Download | 0.365 | a.1.1 | Globin-like |
| View | Download | 0.349 | a.7.8 | GAT domain |
| View | Download | 0.347 | a.22.1 | Histone-fold |
| View | Download | 0.342 | a.24.4 | Hemerythrin |
| View | Download | 0.337 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.321 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.306 | a.39.1 | EF-hand |
| View | Download | 0.300 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.291 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.287 | a.7.1 | Spectrin repeat |
| View | Download | 0.283 | a.118.1 | ARM repeat |
| View | Download | 0.273 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.267 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.243 | b.59.1 | XRCC4, N-terminal domain |
| View | Download | 0.241 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.241 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.229 | d.42.1 | POZ domain |
| View | Download | 0.224 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.209 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.202 | a.130.1 | Chorismate mutase II |
|
Region A: Residues: [375-753] |
1 11 21 31 41 51
| | | | | |
1 CEKEMKVFHY GDYEQLDMDK LMELPNNYFT NSYIYRKALI RKHFLSHTIQ TYTAKNPESI 60
61 LKKAYLESFT IDLDYREFLD DALDENWELR QELENESQDK WWIVKPSMSD KGQGIRVFKT 120
121 IEDLQAIFDS FDDEDSEAEE SGNDDDADDV NGEFMDNNKV NISQLRHFII QEYLTNPLLL 180
181 ASMDNRKFHI RCYVVCRGDL QVFVYDRMLA LFAAKPFVPL DPYAYSVTDL KDLECHLTNT 240
241 CLQSKKKDKD SSVLEFDSIE EIPNERKSNI KEQIHSITND VFLAAVNVNR LNFQPLPNAF 300
301 ETYGVDFLID SNYEVKLLEI NAFPDFKQTG KDLKNLIDEL FDDTVKYCVT PIFNENRNKT 360
361 DDETDPNFVK VIDYTSNGW
|
| Detection Method: | |
| Confidence: | 114.69897 |
| Match: | PF03133 |
| Description: | Tubulin-tyrosine ligase family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
