| Protein: | RDH54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 958 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDH54.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [38..958] | [448..1313] |
|
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0.0 | [10..920] | [1700..2630] |
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0.0 | [2..943] | [421..1337] |
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Region A: Residues: [1-269] |
1 11 21 31 41 51
| | | | | |
1 MAVISVKPRR REKILQEVKN SSVYQTVFDS GTTQMQIPKY ENKPFKPPRR VGSNKYTQLK 60
61 PTATAVTTAP ISKAKVTVNL KRSISAGPTL NLAKKPNNLS SNENTRYFTI MYRKPTTKKH 120
121 KTWSGDGYAT LKASSDKLCF YNEAGKFLGS SMLPSDSDSL FETLFKAGSN EVQLDYELKE 180
181 NAEIRSAKEA LSQNMGNPSP PTTSTTETVP STKNDGGKYQ MPLSQLFSLN TVKRFKSVTK 240
241 QTNEHMTTVP KTSQNSKAKK YYPVFDVNK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [270-338] |
1 11 21 31 41 51
| | | | | |
1 IDNPIVMNKN AAAEVDVIVD PLLGKFLRPH QREGVKFMYD CLMGLARPTI ENPDIDCTTK 60
61 SLVLENDSD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.440 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.587 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.413 | a.65.1 | Annexin |
| View | Download | 0.486 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.408 | a.4.1 | Homeodomain-like |
| View | Download | 0.382 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.377 | d.15.1 | Ubiquitin-like |
| View | Download | 0.370 | a.126.1 | Serum albumin-like |
| View | Download | 0.368 | a.4.1 | Homeodomain-like |
| View | Download | 0.353 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.351 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.333 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.331 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.305 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.304 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.265 | a.28.1 | ACP-like |
| View | Download | 0.262 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.253 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.242 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.240 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.233 | a.5.2 | UBA-like |
| View | Download | 0.230 | d.15.10 | TGS-like |
| View | Download | 0.218 | a.28.1 | ACP-like |
|
Region A: Residues: [339-524] |
1 11 21 31 41 51
| | | | | |
1 ISGCLLADDM GLGKTLMSIT LIWTLIRQTP FASKVSCSQS GIPLTGLCKK ILVVCPVTLI 60
61 GNWKREFGKW LNLSRIGVLT LSSRNSPDMD KMAVRNFLKV QRTYQVLIIG YEKLLSVSEE 120
121 LEKNKHLIDM LVCDEGHRLK NGASKILNTL KSLDIRRKLL LTGTPIQNDL NEFFTIIDFI 180
181 NPGILG
|
| Detection Method: | |
| Confidence: | 11.96 |
| Match: | 1gm5A |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [525-656] |
1 11 21 31 41 51
| | | | | |
1 SFASFKRRFI IPITRARDTA NRYNEELLEK GEERSKEMIE ITKRFILRRT NAILEKYLPP 60
61 KTDIILFCKP YSQQILAFKD ILQGARLDFG QLTFSSSLGL ITLLKKVCNS PGLVGSDPYY 120
121 KSHIKDTQSQ DS
|
| Detection Method: | |
| Confidence: | 19.39794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [657-958] |
1 11 21 31 41 51
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1 YSRSLNSGKL KVLMTLLEGI RKGTKEKVVV VSNYTQTLDI IENLMNMAGM SHCRLDGSIP 60
61 AKQRDSIVTS FNRNPAIFGF LLSAKSGGVG LNLVGRSRLI LFDNDWNPSV DLQAMSRIHR 120
121 DGQKKPCFIY RLVTTGCIDE KILQRQLMKN SLSQKFLGDS EMRNKESSND DLFNKEDLKD 180
181 LFSVHTDTKS NTHDLICSCD GLGEEIEYPE TNQQQNTVEL RKRSTTTWTS ALDLQKKMNE 240
241 AATNDDAKKS QYIRQCLVHY KHIDPARQDE LFDEVITDSF TELKDSITFA FVKPGEICLR 300
301 EQ
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1c4oA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
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