| Protein: | RKM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 552 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RKM3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..552] | [1..552] |
|
|
4.0E-66 | [1..327] | [38..348] |
|
|
3.0E-64 | [12..387] | [36..333] |
|
|
3.0E-63 | [11..325] | [56..355] |
|
|
4.0E-63 | [12..302] | [35..302] |
|
|
3.0E-62 | [11..327] | [53..354] |
|
|
2.0E-61 | [12..327] | [56..356] |
|
Region A: Residues: [1-295] |
1 11 21 31 41 51
| | | | | |
1 MSVTFKDDVH RILKFVANCN GRFEDSKCDI RESPLGGLGV FAKTDIAEGE SILTLNKSSI 60
61 FSASNSSIAN LLCDSSIDGM LALNIAFIYE TTVFRNSSHW YPFLRTIRIR DDEGHLNLPP 120
121 SFWHADAKRL LKGTSFDTLF DSLAPEEEIM EGFEIAVDLA HKWNDEFGLE IPKGFLDVSE 180
181 ENHEEDYNLK LEKFISVAYT LSSRGFEIDA YHETALVPIA DLFNHHVSDP DLKFVSLYDV 240
241 CDKCGEPDMC KHLIAEEYLE AENLDKNMPK VASMETRVID EDLIKSLEND LEKEY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| histone methyltransferase activity | 6.20878333364554 | bayes_pls_golite062009 |
| protein methyltransferase activity | 6.08778683840554 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 5.45106430536252 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 5.45106430536252 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 5.45106430536252 | bayes_pls_golite062009 |
| N-methyltransferase activity | 3.98411678860954 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K9 specific) | 3.54138873512018 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 2.69428385009711 | bayes_pls_golite062009 |
| methyltransferase activity | 2.33114816345072 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 2.25175257044903 | bayes_pls_golite062009 |
| binding | 1.67469558504376 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29511015534184 | bayes_pls_golite062009 |
| protein binding | 1.07532079834012 | bayes_pls_golite062009 |
| transferase activity | 0.653108419761009 | bayes_pls_golite062009 |
| chromatin binding | 0.628375771647179 | bayes_pls_golite062009 |
| catalytic activity | 0.414641636618101 | bayes_pls_golite062009 |
|
Region A: Residues: [296-399] |
1 11 21 31 41 51
| | | | | |
1 SNVTANIEDD DGGIENPDEC VDLVLKNDVA QGQEIFNSYG ELSNVFLLAR YGFTVPENQY 60
61 DIVHLGPDFM KILKKEEKYQ EKVKWWSQVG HGLFSAWYAQ MRQE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.422 | 0.277 | phospholipid metabolic process | a.1.1 | Globin-like |
| View | Download | 0.319 | 0.027 | phospholipid metabolic process | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.492 | 0.014 | phospholipid metabolic process | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.338 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.299 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.295 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.283 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.268 | N/A | N/A | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.267 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.263 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.261 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.255 | N/A | N/A | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.248 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.247 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.246 | N/A | N/A | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.240 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.234 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.233 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.232 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.232 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.230 | N/A | N/A | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.229 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.224 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.224 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.223 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.222 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.222 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.218 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.216 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.214 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.214 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.213 | N/A | N/A | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.206 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.203 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.203 | N/A | N/A | c.55.3 | Ribonuclease H-like |
| View | Download | 0.203 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.202 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.200 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
|
Region A: Residues: [400-552] |
1 11 21 31 41 51
| | | | | |
1 DEEDEDGQAK SDNLSDDIES EEEEEEEEGD DSLESWLSQL YIDSSGEPSP STWALANLLT 60
61 LTAVQWESLF SKKATPHISD SIVNEEKLPF LAKKDNPHSK KLLSNLLKEK QLPCIKGDNS 120
121 SKITSATKSM LQNARTLVQS EHNILDRCLK RLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.265 | a.4.1 | Homeodomain-like |
| View | Download | 0.222 | a.25.1 | Ferritin-like |
| View | Download | 0.263 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.240 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.456 | a.19.1 | Fertilization protein |
| View | Download | 0.207 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.201 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
