YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SRO77
Organism: Saccharomyces cerevisiae
Length: 1010 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO77.

Description E-value Query
Range
Subject
Range
SRO77 - Protein with roles in exocytosis and cation homeostasis; functions in docking and fusion of post-Gol...
0.0 [1..1010] [1..1010]
YD83_SCHPO - Uncharacterized protein C1F3.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F3.03...
SPAC1F3.03 - Lgl family protein
0.0 [2..1008] [4..999]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [1..638] [859..1450]
gi|17225210 - gi|17225210|gb|AAL37301.1|AF323585_1 beta transducin-like protein HET-D2Y [Podospora anserina]
0.0 [1..582] [790..1317]

Back

Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKSRHLKN VSNAIKSARV HDVSNGINSK FFDTKKICTY GINGRITVTT FDYTQSLLAV  60
   61 ATTAGEIHVY GQKQIEVVFT LKNRPQIKHM RFIKGIYLIA VDEKSNIIVL SVHSKQILTT 120
  121 VFCPNSITCF ETDPPLDWML IGLESGSILI YDVDRNQMSK LKIENFQKSV FLPKERLSPV 180
  181 ISIQWNPRDI GTILISYEHI TVIYSFIDYK VKQHFFYQLE PYAPGGDLST NIEKKRTPKV 240
  241 IQSLYHPNSL HILTVHEDNA LVFWDVNSGK LIHARSIFET HVNFPNPALK DCSFTETPAI 300
  301 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 1gg2B_
Description: beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [302-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVSWLCQRNP EYTSLLIATK ATENPCLPQE ITMIDLGGTP MYSVTSFDAM SKYYAKPVQQ  60
   61 KLFSLIGKAP LINFLPLPKA SPYFGGCHDT NLILLLLEDG ELETLIYPAG SFSSKASIFP 120
  121 RSLAWVRPTV TTCIAQSVQK NLWLGMMTIA QSESFLKGGI PATRNIRRHE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.39794
Match: 1c5kA_
Description: TolB, C-terminal domain; TolB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [472-716]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRSALLTGHS NGSVRIWDAS HSEVTDNAVF EVNTAKVLNR ATNLAIKNIS FASETLELAV  60
   61 SSEVGDVILF KFETNKFYGQ LPKSDALQLK FSRFSLDDSK TILVDVSDRG PTNVKQGFIP 120
  121 STVIHAKKGA VSAIMNSNIG FVAVGFIEGT LIILDRRGPA IIFNENIRVI SKAGSSYVST 180
  181 VHFCVMEYGD DGFSSILMLC GTDIGELMTF KILPATNGRF EVKFTDATKT NNQGKILGIN 240
  241 SFAKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [717-1010]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGYSCSATIS KMQGLSKGIA IPGFVTISGA NDIRLVSPGK SKDTHALFKY PIATSGLSFI  60
   61 PIIDGKGERK LSTIMIVLLI NGDIKVLTVP ELKEVKNLRC PVPLSAQYVE NSSILENVDI 120
  121 VIRTGKFQAS LISVLNESAT GSNHTADISQ HTPIDTLYNP DLKIGYRPQV NSLQWARGTI 180
  181 YCTPYQLDEL LGGIERPESK YEESAIARGC ISSSSSNAAR KLPPGTKDHR YARPVRSSGR 240
  241 SNGYGVLKSV SRAIETRLDT VETTINDYAT TMGQTMNDAM EETGRDMMKS AVGF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle