| Protein: | TOD6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 525 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOD6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..525] | [1..525] |
|
|
0.001 | [30..125] | [4..104] |
|
|
0.004 | [62..119] | [18..76] |
|
|
0.01 | [78..119] | [34..76] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MTLPKLSSVS VSSGHVSANS HGFSILSKHP HPNNLVHSHS LSHTNAKSHL PISSTSTKEN 60
61 STNKEEAESL KKNNPSS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [78-168] |
1 11 21 31 41 51
| | | | | |
1 WDPSDDIKLR HLKEIKNLGW KEIAHHFPNR TPNACQFRWR RLKSGNLKSN KTAVIDINKL 60
61 FGVYATGDAT PSAGTPSAEE AVKEEAVEDE D
|
| Detection Method: | |
| Confidence: | 3.045757 |
| Match: | 1mbe__ |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [169-525] |
1 11 21 31 41 51
| | | | | |
1 ITAGSSAIED SPPDFKPLVK PKYMDRKLIT QRSTSTFSDH EPQHTKPRKL FVKPRSFSHS 60
61 ITTNTPNVKT AQQTNLSLYN TTSAKTNKAV NSNDYENIGL VPKIIIRSRR NSFIPSTQIP 120
121 HSTTKTRKNS HSVISSRRSS FNMMHSRRSS FNSHAPTEPI SRRASLVVSP YMSPRRLSTS 180
181 QSVHYHPQHQ YYLNPIASPN CKTDHANDKI THTRTFLDMQ KFANKHPWSR EDDEVLLNNT 240
241 KDKQNHLSPL EISIVLPNNR SELEIQQRMD YLKRKGRVSG FHTNEGCKDE EEEDDIDPLH 300
301 KENGINTPSQ QSQNYGMLEA KHDNPKSSEL SSMTSANDIR NEQDELPGIN SIFKNIF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
