| Protein: | TOD6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 525 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOD6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..525] | [1..525] |
|
|
0.001 | [30..125] | [4..104] |
|
|
0.004 | [62..119] | [18..76] |
|
|
0.01 | [78..119] | [34..76] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MTLPKLSSVS VSSGHVSANS HGFSILSKHP HPNNLVHSHS LSHTNAKSHL PISSTSTKEN 60
61 STNKEEAESL KKNNPSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.778 | a.39.1 | EF-hand |
| View | Download | 0.318 | a.21.1 | HMG-box |
| View | Download | 0.435 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.325 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.360 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.289 | a.74.1 | Cyclin-like |
| View | Download | 0.219 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.218 | a.74.1 | Cyclin-like |
| View | Download | 0.217 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [78-168] |
1 11 21 31 41 51
| | | | | |
1 WDPSDDIKLR HLKEIKNLGW KEIAHHFPNR TPNACQFRWR RLKSGNLKSN KTAVIDINKL 60
61 FGVYATGDAT PSAGTPSAEE AVKEEAVEDE D
|
| Detection Method: | |
| Confidence: | 3.045757 |
| Match: | 1mbe__ |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [169-525] |
1 11 21 31 41 51
| | | | | |
1 ITAGSSAIED SPPDFKPLVK PKYMDRKLIT QRSTSTFSDH EPQHTKPRKL FVKPRSFSHS 60
61 ITTNTPNVKT AQQTNLSLYN TTSAKTNKAV NSNDYENIGL VPKIIIRSRR NSFIPSTQIP 120
121 HSTTKTRKNS HSVISSRRSS FNMMHSRRSS FNSHAPTEPI SRRASLVVSP YMSPRRLSTS 180
181 QSVHYHPQHQ YYLNPIASPN CKTDHANDKI THTRTFLDMQ KFANKHPWSR EDDEVLLNNT 240
241 KDKQNHLSPL EISIVLPNNR SELEIQQRMD YLKRKGRVSG FHTNEGCKDE EEEDDIDPLH 300
301 KENGINTPSQ QSQNYGMLEA KHDNPKSSEL SSMTSANDIR NEQDELPGIN SIFKNIF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
