| Protein: | PEP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1579 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1579] | [1..1549] |
|
|
0.0 | [7..1441] | [14..1406] |
|
|
0.0 | [723..1381] | [182..795] |
|
|
0.0 | [723..1381] | [182..794] |
|
Region A: Residues: [1-217] |
1 11 21 31 41 51
| | | | | |
1 MILLHFVYSL WALLLIPLTN AEEFTPKVTK TIAQDSFDIL SFDDSNTLIR KQDTSVTISF 60
61 DDGETWEKVE GIEGEITWIY IDPFNRHDRA VATAMNGSYL YITNDQGKSW ERITLPDSGE 120
121 SISPRECYIE THPLNKNYFL AKCNYCEKTE VNNDNEENSG DEEGQFEIFN ITRCTDKVFA 180
181 SNDGGKSFSE IKSSLERNEN SPISISDCGF AKTSKDS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [218-291] |
1 11 21 31 41 51
| | | | | |
1 DLESSDTSII CLFQNMQLIM DEFSSPYTES KLVLTTDWGK SLKEFDQFKD KVVNGYRILK 60
61 SHMVVLTQGD RYND
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.568 | a.4.1 | Homeodomain-like |
| View | Download | 0.501 | d.120.1 | Cytochrome b5 |
| View | Download | 0.528 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.454 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.452 | d.58.12 | eEF-1beta-like |
| View | Download | 0.444 | a.64.1 | Saposin |
| View | Download | 0.405 | a.21.1 | HMG-box |
| View | Download | 0.388 | a.64.1 | Saposin |
| View | Download | 0.386 | d.76.1 | GYF domain |
| View | Download | 0.372 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.362 | b.34.2 | SH3-domain |
| View | Download | 0.314 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.300 | a.64.1 | Saposin |
| View | Download | 0.275 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.272 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.270 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.255 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.248 | d.37.1 | CBS-domain |
| View | Download | 0.246 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.230 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.224 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| Term | Confidence | Notes |
| binding | 1.66964148100475 | bayes_pls_golite062009 |
| protein binding | 0.931624635835922 | bayes_pls_golite062009 |
| transporter activity | 0.711149297585691 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.517650155593165 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.276105437109391 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.113736784801445 | bayes_pls_golite062009 |
|
Region A: Residues: [292-594] |
1 11 21 31 41 51
| | | | | |
1 MSSMDVWVSN DLSNFKMAYM PTQLRHSMQG EIYEDAMGRI ILPMSRERSD QEEDKGIVSE 60
61 ILISDSQGLK FSPIPWTANE VFGYINFYQP TYLKGTMIAS LYPLSRRRNR KGKAKGVKSK 120
121 GVTKISVDNG LTWTMLKVVD PDNADSFDCD ITDFENCSLQ NMFYTREGST PTAGILMTTG 180
181 IVGDGSVFDW GDQRTFISRD GGLTWKLAFD FPCLYAVGDY GNVIVAIPYN ADEDDDPQSE 240
241 FYYSLDQGKT WTEYQLETTI YPNEVMNTTP DGSGAKFILN GFTLAHMDGT TNFIYAIDFS 300
301 TAF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [595-685] |
1 11 21 31 41 51
| | | | | |
1 NDKTCEENDF EDWNLAEGKC VNGVKYKIRR RKQDAQCLVK KVFEDLQLFE TACDKCTEAD 60
61 YECAFEFVRD ATGKCVPDYN LIVLSDVCDK T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.509 | a.39.1 | EF-hand |
| View | Download | 0.246 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.394 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [686-1421] |
1 11 21 31 41 51
| | | | | |
1 KKKTVPVKPL QLVKGDKCKK PMTVKSVDIS CEGVPKKGTN DKEIVVTENK FDFKIQFYQY 60
61 FDTVTDESLL MINSRGEAYI SHDGGQTIKR FDSNGETIIE VVFNPYYNSS AYLFGSKGSI 120
121 FSTHDRGYSF MTAKLPEARQ LGMPLDFNAK AQDTFIYYGG KNCESILSPE CHAVAYLTND 180
181 GGETFTEMLD NAIHCEFAGS LFKYPSNEDM VMCQVKEKSS QTRSLVSSTD FFQDDKNTVF 240
241 ENIIGYLSTG GYIIVAVPHE NNELRAYVTI DGTEFAEAKF PYDEDVGKQE AFTILESEKG 300
301 SIFLHLATNL VPGRDFGNLL KSNSNGTSFV TLEHAVNRNT FGYVDFEKIQ GLEGIILTNI 360
361 VSNSDKVAEN KEDKQLKTKI TFNEGSDWNF LKPPKRDSEG KKFSCSSKSL DECSLHLHGY 420
421 TERKDIRDTY SSGSALGMMF GVGNVGPNLL PYKECSTFFT TDGGETWAEV KKTPHQWEYG 480
481 DHGGILVLVP ENSETDSISY STDFGKTWKD YKFCADKVLV KDITTVPRDS ALRFLLFGEA 540
541 ADIGGSSFRT YTIDFRNIFE RQCDFDITGK ESADYKYSPL GSKSNCLFGH QTEFLRKTDE 600
601 NCFIGNIPLS EFSRNIKNCS CTRQDFECDY NFYKANDGTC KLVKGLSPAN AADVCKKEPD 660
661 LIEYFESSGY RKIPLSTCEG GLKLDAPSSP HACPGKEKEF KEKYSVSAGP FAFIFISILL 720
721 IIFFAAWFVY DRGIRR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1422-1579] |
1 11 21 31 41 51
| | | | | |
1 NGGFARFGEI RLGDDGLIEN NNTDRVVNNI VKSGFYVFSN IGSLLQHTKT NIAHAISKIR 60
61 GRFGNRTGPS YSSLIHDQFL DEADDLLAGH DEDANDLSSF MDQGSNFEIE EDDVPTLEEE 120
121 HTSYTDQPTT TDVPDTLPEG NEENIDRPDS TAPSNENQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
