| Protein: | AI4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 544 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AI4.
| Description | E-value | Query Range |
Subject Range |
|
|
550.0 | [0..1] | [544..1] |
|
Region A: Residues: [1-425] |
1 11 21 31 41 51
| | | | | |
1 MVQRWLYSTN AKDIAVLYFM LAIFSGMAGT AMSLIIRLEL AAPGSQYLHG NSQLFNVLVM 60
61 PALIGGFGNY LLPLMIGATD TAFPRINNIA FWVLPMGLVC LVTSTLVESG AGTGWTVYPP 120
121 LSSIQAHSGP SVDLAIFALH LTSISSLLGA INFIVTTLNM RTNGMTMHKL PLFVWSIFIT 180
181 AFLLLLSLPV LSAGITMLLL DRNFNTSFFE VSGGGDPILY EHLFWFFGQT VATIIMLMMY 240
241 NDMHFSKCWK LLKKWITNIM STLFKALFVK MFMSYNNQQD KMMNNTMLKK DNIKRSSETT 300
301 RKMLNNSMNK KFNQWLAGLI DGDGYFGIVS KKYVSLEITV ALEDEMALKE IQNKFGGSIK 360
361 LRSGVKAIRY RLTNKTGMIK LINAVNGNIR NTKRLVQFNK VCILLGIDFI YPIKLTKDNS 420
421 WFVGF
|
| Detection Method: |  |
| Confidence: | 135.0 |
| Match: | 1occA |
| Description: | Mitochondrial cytochrome c oxidase, subunit I |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrogen ion transmembrane transporter activity | 2.35288611494101 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 2.17205034949175 | bayes_pls_golite062009 |
| heme-copper terminal oxidase activity | 2.00288767149295 | bayes_pls_golite062009 |
| catalytic activity | 1.95966890211023 | bayes_pls_golite062009 |
| cytochrome-c oxidase activity | 1.60542104698557 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on heme group of donors | 1.60542104698557 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on heme group of donors, oxygen as acceptor | 1.60542104698557 | bayes_pls_golite062009 |
| binding | 0.733970829597091 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.5109577542055 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 0.423208299895845 | bayes_pls_golite062009 |
| protein binding | 0.358081002328109 | bayes_pls_golite062009 |
|
Region A: Residues: [426-544] |
1 11 21 31 41 51
| | | | | |
1 FDADGTINYS FKNNHPQLTI SVTNKYLQDV QEYKNILGGN IYFDKSQNGY YKWSIQSKDM 60
61 VLNFINDYIK MNPSRTTKMN KLYLSKEFYN LKELKAYNKS SDSMQYKAWL NFENKWKNK
|
| Detection Method: | |
| Confidence: | 9.221849 |
| Match: | 1p8kZ |
| Description: | The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nuclease activity | 1.30590086180382 | bayes_pls_golite062009 |
| catalytic activity | 1.00294942392567 | bayes_pls_golite062009 |
| binding | 0.947409481120466 | bayes_pls_golite062009 |
| nucleic acid binding | 0.92351380308588 | bayes_pls_golite062009 |
| hydrolase activity | 0.908706495902542 | bayes_pls_golite062009 |
| endonuclease activity | 0.892525491806151 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.861094108940112 | bayes_pls_golite062009 |
| DNA binding | 0.571084560404215 | bayes_pls_golite062009 |
| RNA binding | 0.407564756021673 | bayes_pls_golite062009 |
