YRC Public Data Repository - Protein Structure Prediction

Protein:	YEPB_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	629 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEPB_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|44985138 - gi\|44985138\|gb\|AAS53916.1\| AFR545Wp [Ashbya gossypii ATCC 10895] gi\|44985138, gi\|... - gi\|45199063\|ref\|NP_986092.1\| AFR545Wp [Ashbya gossypii ATCC 10895], gi\|44985138\|gb\|AAS53916.1\| AFR54...	571.0	[0..10]	[629..55]
KRE6_YEAST - Beta-glucan synthesis-associated protein KRE6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|151942930 - gi\|151942930\|gb\|EDN61276.1\| killer toxin resistant protein [Saccharomyces cerevisiae YJM789] KRE6 - Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functional... gi\|207340234 - gi\|207340234\|gb\|EDZ68649.1\| YPR159Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408082 - gi\|190408082\|gb\|EDV11347.1\| beta-glucan synthase [Saccharomyces cerevisiae RM11-1a]	551.0	[0..14]	[629..89]
gi\|68478671, gi\|... - gi\|68478671\|ref\|XP_716604.1\| likely beta-1,6-glucan synthase [Candida albicans SC5314], gi\|46438276\|... orf19.7363 - KRE6 CGDID:CAL0004712 Assembly 19, Contig19-2513 (37708, 39930) CDS, translated using codon table 12...	535.0	[0..49]	[625..148]
KRE6_CANAX - Beta-glucan synthesis-associated protein KRE6 OS=Candida albicans GN=KRE6 PE=2 SV=1	530.0	[0..49]	[625..148]
gi\|49526993 - gi\|49526993\|emb\|CAG60620.1\| unnamed protein product [Candida glabrata] gi\|50290503, gi\|... - gi\|50290503\|ref\|XP_447683.1\| hypothetical protein CAGL0I10054g [Candida glabrata CBS138], gi\|4952699...	522.0	[0..29]	[629..115]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGHSDLPR QPERVAQNPF LTFDQDSFPS SYGSSLNVSE QTSGSSSTSP LPQISCLLRK  60
   61 DDVPLANKEL SRSLIHVQEL SRYPPFYNQD HQHLGVPRSR VGSDVWKMRE KSFLSPSQFS 120
  121 SIDLSWVYRS KEEDDDFHDP KSSVVSLMGE EDYLGWSRFC DLFFLFVLSL GIGLLFIVFP 180
  181 ALTFTGNITP SKEKFDAIMA NQITDHLFAH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [211-629]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVPRTNLID KDTPSTAYHR TGYNGRKYNL VFSDEFNKEG RSFYSGNDQF WEAVNIHYAA  60
   61 TNDLDWYDPD AITTVNGTLA IQLDAFWNRD LNFRSGMLQS WNKLCLKGGI IEVSASLAGS 120
  121 GEHAGLWPGI WTLGNLARPG YMATTDGVWP YAYSQCDVGI TPNQSSYDGI SYLPGQKLPN 180
  181 CVCLNEDHPS PGVGRGAPEI DILEGSTEKL HPDDELDIGV VSQSGQFAPF DFFWLPNYDY 240
  241 LAVYNDSITH MNSYVGGPFQ QALSGITTLN NTWYGGNAFQ IYGFDYKPGE GTNGYVSWFV 300
  301 GPNYTWSMLG SAVGQNGNVG PRQISEEPMS IIFNLGISNN WAYYYFRDLS FPAVMYIDYI 360
  361 RIYQDPDDTN SHIGCDPPGY PTTKYIEEHP LAYKNPNATT WEMAGYTWPK NSLMHKCNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1dypA
Description:	kappa-Carrageenase, catalytic
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.82375683349763	bayes_pls_golite062009
protein binding	0.964880666937228	bayes_pls_golite062009
nucleic acid binding	0.351620947205387	bayes_pls_golite062009
transcription regulator activity	0.21069016920331	bayes_pls_golite062009
DNA binding	0.0547031308830381	bayes_pls_golite062009
carbohydrate binding	0.0124152418993231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: