YRC Public Data Repository - Protein Structure Prediction

Protein:	YIDF_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	873 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIDF_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|40744942, gi\|... - gi\|67903794\|ref\|XP_682153.1\| hypothetical protein AN8884.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	370.0	[0..156]	[589..6]
gi\|46108740, gi\|... - gi\|46108740\|ref\|XP_381428.1\| hypothetical protein FG01252.1 [Gibberella zeae PH-1], gi\|42544534\|gb\|E...	333.0	[0..109]	[600..6]
gi\|145011353, gi... - gi\|39945164\|ref\|XP_362119.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA50805....	316.0	[0..157]	[602..15]
gi\|85111471 - gi\|85111471\|ref\|XP_963952.1\| hypothetical protein NCU09310 [Neurospora crassa OR74A] gi\|32423129, gi\|... - gi\|32423129\|ref\|XP_332002.1\| hypothetical protein [Neurospora crassa], gi\|28925705\|gb\|EAA34716.1\| co...	312.0	[0..120]	[593..2]
gi\|59802836 - gi\|59802836\|gb\|AAX07633.1\| HEX2 protein-like protein [Magnaporthe grisea]	311.0	[0..157]	[602..15]
REG1_YEAST - Resistance to glucose repression protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ... REG1 - Regulatory subunit of type 1 protein phosphatase Glc7p, involved in negative regulation of glucose-r...	293.0	[0..255]	[594..128]
gi\|116180332, gi... - gi\|88185091\|gb\|EAQ92559.1\| hypothetical protein CHGG_00794 [Chaetomium globosum CBS 148.51], gi\|1161...	247.0	[0..242]	[592..117]
gi\|115449931, gi... - gi\|115449931\|ref\|XP_001218733.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	216.0	[0..184]	[573..16]
gi\|83776461 - gi\|83776461\|dbj\|BAE66580.1\| unnamed protein product [Aspergillus oryzae] gi\|169786505 - gi\|169786505\|ref\|XP_001827713.1\| hypothetical protein [Aspergillus oryzae RIB40]	209.0	[0..179]	[573..32]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKPDANDQ CMVKETISRM SMSKEKPFLR RNYSSPSFND SVNSVNDEFQ TYQLPNGEFS  60
   61 DNMNDLYFPF RKGNESLMTE NSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPISEQDTQH NHISDFPSRR MQLDGMNHSN NDTYSTAIPF SKDSSVFDAV GQQSSVPIHI  60
   61 NPAYTNSHQN SYSLNETYLS YDFFDNHRGA SSSAVSKDGL ASPRPTKDVD ADDTTWYFTS 120
  121 SPSFQPLKDS DRSQTKNTHE ETSPIVSSPE DDADAAFKPS SLPSTSISAS SNAFYKPAAP 180
  181 DNERPLDPHI TPYLRLQLLT TGADDNDIRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [294-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NALTQVDYLS YDWKETDIWA SWREITKTKA NYDNGIRLEN ASWRTWMKHK FKLKTISPET  60
   61 LNWLKECDVT WLYGPLLHTS MPSRHHSHRK KEKEKEKSKA PRVTPLTHKT NDDEANHSET 120
  121 SSGSSLAKKP ILKRRTPQEL LLSGRDLTPW PQIRRFDSLL ARNRGDIFSN RNHATIRSAL 180
  181 FSQRYPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [481-590]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSKRHIHFND RVQQCIAVDI DSLPSDSESA SYNTDDANSV VSPSKDGIST TTVSSDATRS  60
   61 SQSSHFRIIE DLPDSKLKYS LEDQATYDQS SRYPGRHFGK TGRSHFPRAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [591-873]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYYGENDFEE DEVYRDDRHY ENEHDEYDPN LIYYDNEPTE ENRLVFEDTN NTFIDTDSDD  60
   61 SNADESQFLE YANDSPNSSE SLESLNNQSY SSSPYSVFSH PPPYMGRQSL NDSPQTSDFK 120
  121 ASNLNDSSSN VHSIFQTRET TSPSVQNKTP TKYHRELKSS KDGHEQASPL VSSSPSGSFT 180
  181 SQISPAATTT ATNLDAVSLS PSTVRTGSQI SDIGNDAIST TRKTVRAFLE NANPYSTNND 240
  241 GNPSNNTSDV EVNETSMNDN SEEPISSNWL VDLFQKSLKS FRE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits