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View Structure Prediction Details

Protein: gi|115440867, gi...
Organism: Oryza sativa Japonica Group
Length: 454 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115440867, gi....

Description E-value Query
Range
Subject
Range
gi|92883395 - gi|92883395|gb|ABE86916.1| Peptidase S10, serine carboxypeptidase [Medicago truncatula]
448.0 [0..2] [453..11]

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Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKAAALVL LLVSVSVAAA ASGDQESDRI RELPGQPAKV RFSQYSGYVT VNQAHGRALF  60
   61 YWLVEAVPAA GPIAPLVLWL NGGPGCSSVG YGASEEVGPF RIRPDGKTLY LNPNSWNKAA 120
  121 NLLFLESPAG VGFSYSNKTL DLYVAGDAKT ASDAYAFLVN WLERFPQYKY REFYIAGESY 180
  181 AGHYVPQLAQ LIYEQNKGIQ NPIINLKGFM VGNAVTDDYH DYLGTFEYWW THGLISDNTY 240
  241 HNLKKTCLLE SSEHPSPECL KNLNLASSEE GNIDPYSLYT KPCNNTASLK LGLGGRYPWL 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.30103
Match: 1bcrA
Description: Serine carboxypeptidase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.3250951453762 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
endopeptidase activity 0.35106325845064 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.1174692258176 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [301-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRAYDPCTER YSSIYYNRPE VQIAMHANTT GIQYSWKTCS DIVGSYWADS PKSMLPIYQE  60
   61 LIAAGIRIWV FSGDTDAVVP VTATRYSIDA LKLPTMVNWY PWYDHGKVGG WSQVYKGLTL 120
  121 VTIAGAGHEV PLHRPREALI LFRHFLQNTP MPTQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.39794
Match: 1bcrB
Description: COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, ANTIPAIN, AND ARGININE AT ROOM TEMPERATURE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle