YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254235223, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254235223, gi....

Description	E-value	Query Range	Subject Range
gi\|115585350, gi... - gi\|32042298\|ref\|ZP_00139881.1\| COG1309: Transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14...	3.0E-32	[1..194]	[1..194]
gi\|71838703, gi\|... - gi\|71838703\|ref\|ZP_00678460.1\| regulatory protein, TetR [Pelobacter propionicus DSM 2379], gi\|717407...	3.0E-29	[1..192]	[18..210]
gi\|152988824, gi... - gi\|94413391\|ref\|ZP_01293276.1\| hypothetical protein PaerP_01004796 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-29	[1..193]	[1..193]
gi\|24984038, gi\|... - gi\|26989198\|ref\|NP_744623.1\| TetR family transcriptional regulator [Pseudomonas putida KT2440], gi\|2...	4.0E-29	[1..192]	[1..192]
gi\|91714748, gi\|... - gi\|91792746\|ref\|YP_562397.1\| regulatory protein, TetR [Shewanella denitrificans OS217], gi\|91714748\|...	7.0E-29	[1..193]	[1..193]
gi\|28809783 - gi\|28809783\|dbj\|BAC62758.1\| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633... gi\|28901270, gi\|... - gi\|28901270\|ref\|NP_800925.1\| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 221063...	3.0E-28	[1..193]	[1..193]
gi\|71846360, gi\|... - gi\|71906739\|ref\|YP_284326.1\| TetR family transcriptional regulator [Dechloromonas aromatica RCB], gi...	4.0E-28	[1..192]	[1..192]
gi\|106881833, gi... - gi\|119946706\|ref\|YP_944386.1\| transcriptional regulator of TetR family protein [Psychromonas ingraha...	9.0E-28	[4..191]	[5..193]
gi\|254229116, gi... - gi\|75856625\|ref\|ZP_00764250.1\| COG1309: Transcriptional regulator [Vibrio sp. Ex25], gi\|254229116\|re...	1.0E-27	[1..193]	[1..193]
gi\|78195096, gi\|... - gi\|78223841\|ref\|YP_385588.1\| TetR family transcriptional regulator [Geobacter metallireducens GS-15]...	2.0E-27	[1..194]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSYDDTRQ HLLDTGYRIM AVKGFSGVGL NEILQSAGVP KGSFYHYFKS KEQFGQALLE  60
   61 DYFRVYLADM DQRFSAPGLN ARERLMSYWQ KWLDNACPPC DEQRCLVVKL SAEVADLSES 120
  121 MRITLRDGSD GIIERLVGCL GQGRDDGSLA PCDARHMASA LYQLWLGASL LSKLHRSPGP 180
  181 LETAMQTTRS LLEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1vi0A
Description:	Crystal structure of a transcriptional regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.29755359385997	bayes_pls_golite062009
DNA binding	3.01268207226307	bayes_pls_golite062009
transcription factor activity	3.00408040212712	bayes_pls_golite062009
nucleic acid binding	2.9430921064275	bayes_pls_golite062009
binding	1.69234246404005	bayes_pls_golite062009
sequence-specific DNA binding	0.46503550280898	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.24108783215685	bayes_pls_golite062009
protein binding	0.111941607625758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: