YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194547798, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194547798, gi....

Description	E-value	Query Range	Subject Range
gi\|150963741, gi... - gi\|94415784\|ref\|ZP_01295619.1\| hypothetical protein PaerP_01002354 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..463]	[1..463]
gi\|94310908, gi\|... - gi\|94310908\|ref\|YP_584118.1\| PhoH-like protein [Ralstonia metallidurans CH34], gi\|93354760\|gb\|ABF088...	0.0	[5..463]	[95..564]
gi\|83720282, gi\|... - gi\|83720282\|ref\|YP_442708.1\| PhoH family protein [Burkholderia thailandensis E264], gi\|83654107\|gb\|A...	0.0	[5..463]	[163..631]
gi\|115281842, gi... - gi\|74019131\|ref\|ZP_00689749.1\| PhoH-like protein [Burkholderia ambifaria AMMD], gi\|72608118\|gb\|EAO44...	0.0	[13..463]	[146..606]
gi\|124259505, gi... - gi\|124266730\|ref\|YP_001020734.1\| PhoH-like ATPase [Methylibium petroleiphilum PM1], gi\|124259505\|gb\|... gi\|47573799 - gi\|47573799\|ref\|ZP_00243836.1\| COG1875: Predicted ATPase related to phosphate starvation-inducible p...	0.0	[8..463]	[96..562]
gi\|52427054, gi\|... - gi\|53723631\|ref\|YP_103052.1\| PhoH family protein [Burkholderia mallei ATCC 23344], gi\|52427054\|gb\|AA...	0.0	[11..463]	[135..597]
gi\|116647975, gi... - gi\|67662846\|ref\|ZP_00460132.1\| PhoH-like protein [Burkholderia cenocepacia HI2424], gi\|67103509\|gb\|E...	0.0	[11..463]	[138..600]
gi\|113527022, gi... - gi\|113868246\|ref\|YP_726735.1\| ATPase related to phosphate starvation-inducible protein PhoH [Ralston...	0.0	[5..463]	[98..567]
gi\|67660614, gi\|... - gi\|67660614\|ref\|ZP_00457957.1\| PhoH-like protein [Burkholderia cenocepacia AU 1054], gi\|67091835\|gb\|...	0.0	[11..463]	[138..600]
gi\|76581546, gi\|... - gi\|76812093\|ref\|YP_333802.1\| PhoH family protein [Burkholderia pseudomallei 1710b], gi\|76581546\|gb\|A...	0.0	[11..463]	[166..628]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDHGRSRPT QPTLYVLDTN VLIHDPNALL NFQEHRVAIP MTVLEELDKL KTGKHTIAAE  60
   61 CRQAIRLIDQ VLGEATPEQV EGGVPIQRGK NGPSGSLSIL MSKRAEPITW LPEHLNDNKI 120
  121 INQLVELKSR HSGVRVVLVT KDINMRLKAR ACGVDAEDYH TDQLIDDVAL LSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.39794
Match:	2dokA
Description:	No description for 2dokA was found.

Predicted Domain #2

Region A:
Residues: [174-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYHSLAGSFW DRVSKVETRQ DHGRTWHRVQ LTDNLPAVHI NEFIVDEQGF VGWIKGIQQD  60
   61 ELTILDLHQE PLLHQEAWGL RPRDVYQSLA LYALLDPDIH LVNLSGAAGS GKTILALAAA 120
  121 IEQTMVSKRY RRIIATRSVQ GLDEDIGFLP GTEAEKMEPW LGAITDNLEA LHMDDECTHG 180
  181 SVDYILSKVP LQFKSLNYIR GRSFQQSLIL IDECQNLTPH QMKTIITRAG SGSKVICLGN 240
  241 LAQIDTPYLS ATSSGLTYLT ERFKDFPHGV HVTLQGVPRS VLAEYAEAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1w36D
Description:	RecBCD:DNA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.51994251520164	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.99771155133571	bayes_pls_golite062009
pyrophosphatase activity	0.99645011792575	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.975793726871634	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.974850635687898	bayes_pls_golite062009
hydrolase activity	0.950467888620299	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
purine nucleotide binding	0.26761549928574	bayes_pls_golite062009
purine ribonucleotide binding	0.264809267091232	bayes_pls_golite062009
ribonucleotide binding	0.26459719047586	bayes_pls_golite062009
nucleotide binding	0.258849546636602	bayes_pls_golite062009
ATP binding	0.164254028163089	bayes_pls_golite062009
adenyl ribonucleotide binding	0.142702520773108	bayes_pls_golite062009
adenyl nucleotide binding	0.134419547865173	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: