YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254243429, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	504 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254243429, gi....

Description	E-value	Query Range	Subject Range
gi\|152989630, gi... - gi\|94414836\|ref\|ZP_01294690.1\| hypothetical protein PaerP_01003416 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..504]	[1..504]
gi\|116054058, gi... - gi\|53727080\|ref\|ZP_00140763.2\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa UCBPP-PA14], g...	0.0	[1..504]	[1..504]
gi\|87281645, gi\|... - gi\|87303848\|ref\|ZP_01086553.1\| threonine dehydratase [Synechococcus sp. WH 5701], gi\|87281645\|gb\|EAQ...	0.0	[1..504]	[1..504]
gi\|77868036, gi\|... - gi\|77953083\|ref\|ZP_00817494.1\| Threonine dehydratase I [Marinobacter aquaeolei VT8], gi\|77868036\|gb\|...	0.0	[1..504]	[1..504]
gi\|23105780, gi\|... - gi\|67155499\|ref\|ZP_00417127.1\| Threonine dehydratase I [Azotobacter vinelandii AvOP], ref\|ZP_0009223... gi\|226946832, gi... - gi\|67155499\|ref\|ZP_00417127.1\| Threonine dehydratase I [Azotobacter vinelandii AvOP], gi\|67087300\|gb...	0.0	[1..504]	[1..504]
gi\|86604872 - gi\|86604872\|ref\|YP_473635.1\| threonine dehydratase [Cyanobacteria bacterium Yellowstone A-Prime] gi\|86553414, gi\|... - gi\|86604872\|ref\|YP_473635.1\| threonine dehydratase [Synechococcus sp. JA-3-3Ab], gi\|86553414\|gb\|ABC9...	0.0	[1..504]	[1..503]
gi\|70733190, gi\|... - gi\|70733190\|ref\|YP_262963.1\| threonine dehydratase [Pseudomonas fluorescens Pf-5], gi\|68347489\|gb\|AA...	0.0	[1..504]	[1..504]
gi\|90415223\|ref\|... - threonine dehydratase [marine gamma proteobacterium HTCC2207] gi\|90415223, gi\|... - gi\|90415223\|ref\|ZP_01223157.1\| threonine dehydratase [marine gamma proteobacterium HTCC2207], gi\|903...	0.0	[1..504]	[1..503]
gi\|68213317, gi\|... - gi\|91774484\|ref\|YP_544240.1\| threonine dehydratase [Methylobacillus flagellatus KT], gi\|91708471\|gb\|...	0.0	[1..504]	[1..503]
gi\|77385605, gi\|... - gi\|77461602\|ref\|YP_351109.1\| threonine dehydratase [Pseudomonas fluorescens Pf0-1], gi\|77385605\|gb\|A...	0.0	[1..504]	[1..504]

Back

Predicted Domain #1

Region A:
Residues: [1-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQYVKKIL TSRVYDVAVE TPLQPARQLS ERLGNQVLLK REDLQPVFSF KIRGAYNKVA  60
   61 QLTEEEKARG VIAASAGNHA QGLALAAKRQ GIRAVIVMPK TTPEIKVQAV RAHGAKAVLH 120
  121 GDAFPEALAH ALKLVDEKGY TFVHPYDDPD TIAGQGTVAM EILRQQPGRL DAIFVPVGGG 180
  181 GLVAGIAAYV KYLRPEIKVI GVEPDESNCL QAAMAAGERV VLGQVGLFAD GVAVAQIGQH 240
  241 TFDICKDHVD EVITVSTDEI CAAIKDIYDD TRSITEPAGA LAVAGIKKYV ERERAEGQTL 300
  301 VAIDSGANVN FDRLRHVAER AELGERREAI IAVTIPERPG SFKAFCEAVG KRQITEFNYR 360
  361 YHSGSEAHIF VGVQTHPEND PREALVAYLR EKGFPVLDLT DNELAKLHIR HMVGGHAVKV 420
  421 SDEMVFRFEF PERPGALFNF LTKLGGRWNI SMFHYRNHGA ADGRVVAGLQ VPEDERHLIP 480
  481 QTLEAIGYPY WDETANPAYQ LFLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	150.0
Match:	1tdjA
Description:	THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	6.50887202511626	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	5.28856942236052	bayes_pls_golite062009
cysteine synthase activity	5.18562032111987	bayes_pls_golite062009
threonine racemase activity	4.44340924206787	bayes_pls_golite062009
threonine synthase activity	3.59927532963055	bayes_pls_golite062009
L-threonine ammonia-lyase activity	3.33109959091277	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	2.61572425646119	bayes_pls_golite062009
tryptophan synthase activity	1.99526226543975	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
cystathionine beta-synthase activity	1.4517088142802	bayes_pls_golite062009
binding	1.14906798355281	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
protein binding	0.341967829237094	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009
transcription regulator activity	0.248470717905239	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: