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View Structure Prediction Details

Protein: gi|84522675
Organism: Burkholderia mallei SAVP1
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|84522675.

Description E-value Query
Range
Subject
Range
gi|237812097, gi... - gi|237812097|ref|YP_002896548.1| N-acetylmuramoyl-L-alanine amidase AmiD [Burkholderia pseudomallei ...
gi|134282269, gi... - gi|134282269|ref|ZP_01768974.1| N-acetylmuramoyl-L-alanine amidase [Burkholderia pseudomallei 305], ...
gi|167911107 - gi|167911107|ref|ZP_02498198.1| N-acetylmuramoyl-L-alanine amidase domain protein [Burkholderia pseu...
gi|184210476, gi... - gi|99908486|ref|ZP_01316178.1| hypothetical protein Bpse1_03004497 [Burkholderia pseudomallei 1655],...
285.0 [0..1] [299..1]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPLRHTLL ASFSMLAAAC TTPTLVNRGD YYADTSLPAR SADSRIRFLV MHYTEIGEAP  60
   61 SLRVLTQENV SAHYVVPDAP RTERGAPVVY QLVPESERAW HAGVSAWQGA TELNGVSIGI 120
  121 ENVNRGPIDT PHGRMWAPYP PAQVDAIVRL AKDIVARYRI PPTRVVGHSD IAPQRKIDPG 180
  181 PLFPWRALAK AGVGAWPDDE TVAARLAGRP PKSLVDVREL QLKLARYGYD VATDGVLDDR 240
  241 TRRVFSAFQM HFRPTDYAGN PDAETDAIAQ ALLDKYMPSQ PAPERDAAAL DAASGVAAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.30103
Match: 2bgxA
Description: No description for 2bgxA was found.

Predicted functions:

Term Confidence Notes
N-acetylmuramoyl-L-alanine amidase activity 5.29207604418857 bayes_pls_golite062009
peptidoglycan binding 5.10635543502728 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 3.20235326428146 bayes_pls_golite062009
N-acetyl-anhydromuramoyl-L-alanine amidase activity 1.8723848738588 bayes_pls_golite062009
pattern binding 1.3169647365105 bayes_pls_golite062009
hydrolase activity 1.08510134637257 bayes_pls_golite062009
catalytic activity 0.628556091191359 bayes_pls_golite062009
receptor activity 0.165305685738616 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle