YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|188493939, gi...
Organism:	Escherichia coli 53638
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188493939, gi....

Description	E-value	Query Range	Subject Range
gi\|218555351, gi... - gi\|218555351\|ref\|YP_002388264.1\| L-fuculose phosphate aldolase [Escherichia coli IAI1], gi\|218362119... gi\|218353131, gi... - gi\|218696399\|ref\|YP_002404066.1\| L-fuculose phosphate aldolase [Escherichia coli 55989], gi\|21835313... gi\|75256861, gi\|... - gi\|75256861\|ref\|ZP_00728455.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|209920251, gi... - gi\|209920251\|ref\|YP_002294335.1\| L-fuculose phosphate aldolase [Escherichia coli SE11], gi\|209913510... gi\|75233974, gi\|... - gi\|75233974\|ref\|ZP_00718423.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|194415787, gi... - gi\|75212580\|ref\|ZP_00712604.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	211.0	[0..1]	[215..1]
gi\|115514152, gi... - gi\|117625028\|ref\|YP_854016.1\| L-fuculose phosphate aldolase [Escherichia coli APEC O1], gi\|115514152... FUCA_ECOL6 - L-fuculose phosphate aldolase OS=Escherichia coli O6 GN=fucA PE=3 SV=1 FUCA_ECOL6 - L-fuculose phosphate aldolase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fucA... gi\|190908437, gi... - gi\|75241810\|ref\|ZP_00725629.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|237706569, gi... - gi\|237706569\|ref\|ZP_04537050.1\| L-fuculose phosphate aldolase [Escherichia sp. 3_2_53FAA], gi\|226899... gi\|227888341, gi... - gi\|227888341\|ref\|ZP_04006146.1\| L-fuculose phosphate aldolase [Escherichia coli 83972], gi\|227834610... gi\|91212168, gi\|... - gi\|91212168\|ref\|YP_542154.1\| L-fuculose phosphate aldolase [Escherichia coli UTI89], gi\|91073742\|gb\|... gi\|218366557, gi... - gi\|218559788\|ref\|YP_002392701.1\| L-fuculose phosphate aldolase [Escherichia coli S88], gi\|218366557\|... gi\|218690923, gi... - gi\|218690923\|ref\|YP_002399135.1\| L-fuculose phosphate aldolase [Escherichia coli ED1a], gi\|218428487... gi\|110642941, gi... - gi\|110642941\|ref\|YP_670671.1\| L-fuculose phosphate aldolase [Escherichia coli 536], gi\|110344533\|gb\|...	210.0	[0..1]	[215..1]
gi\|68344372, gi\|... - gi\|70730073\|ref\|YP_259812.1\| hypothetical protein PFL_2705 [Pseudomonas fluorescens Pf-5], gi\|683443...	210.0	[0..2]	[215..17]
gi\|209761294, gi... - pir\|\|F85931 L-fuculose-1-phosphate aldolase [imported] - Escherichia coli (strain O157:H7, substrain... gi\|157067934, gi... - gi\|75196771\|ref\|ZP_00706841.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|168788064, gi... - gi\|189372191\|gb\|EDU90607.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 str. EC869], gi\|... gi\|75187528, gi\|... - gi\|75187528\|ref\|ZP_00700795.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|189365487, gi... - gi\|189365487\|gb\|EDU83903.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 str. EC4501], gi... gi\|12517279, gi\|... - gi\|15803322\|ref\|NP_289355.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 EDL933], gi\|125... gi\|170018954, gi... - gi\|170018954\|ref\|YP_001723908.1\| L-fuculose phosphate aldolase [Escherichia coli ATCC 8739], gi\|1697... FUCA_ECO57 - L-fuculose phosphate aldolase OS=Escherichia coli O157:H7 GN=fucA PE=3 SV=1 gi\|189376213, gi... - gi\|189376213\|gb\|EDU94629.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 str. EC508], gi\|... gi\|217319180, gi... - gi\|217326813\|ref\|ZP_03442896.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 str. TW14588... gi\|215266189, gi... - gi\|215488117\|ref\|YP_002330548.1\| L-fuculose phosphate aldolase [Escherichia coli O127:H6 str. E2348/... gi\|124528765, gi... - gi\|124528765\|ref\|ZP_01699989.1\| L-fuculose phosphate aldolase [Escherichia coli B], gi\|124500293\|gb\|... gi\|218706296, gi... - gi\|218706296\|ref\|YP_002413815.1\| L-fuculose phosphate aldolase [Escherichia coli UMN026], gi\|2184333... gi\|218701517, gi... - gi\|218701517\|ref\|YP_002409146.1\| L-fuculose phosphate aldolase [Escherichia coli IAI39], gi\|21837150... gi\|15832914, gi\|... - gi\|15832914\|ref\|NP_311687.1\| L-fuculose phosphate aldolase [Escherichia coli O157:H7 str. Sakai], gi... gi\|191168558, gi... - gi\|75228239\|ref\|ZP_00714896.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	210.0	[0..1]	[215..1]
gi\|73856849, gi\|... - gi\|74313372\|ref\|YP_311791.1\| L-fuculose phosphate aldolase [Shigella sonnei Ss046], gi\|73856849\|gb\|A...	210.0	[0..1]	[215..1]
gi\|9955365 - gi\|9955365\|pdb\|1DZW\|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant F131a	209.0	[0..1]	[215..1]
gi\|53728924 - gi\|53728924\|ref\|ZP_00134508.2\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|126209151, gi... - gi\|126209151\|ref\|YP_001054376.1\| L-fuculose phosphate aldolase [Actinobacillus pleuropneumoniae L20]...	209.0	[0..1]	[215..1]
gi\|82545098, gi\|... - gi\|82545098\|ref\|YP_409045.1\| L-fuculose phosphate aldolase [Shigella boydii Sb227], gi\|81246509\|gb\|A...	208.0	[0..1]	[215..1]
gi\|86571803, gi\|... - gi\|86748775\|ref\|YP_485271.1\| class II aldolase/adducin-like [Rhodopseudomonas palustris HaA2], gi\|86...	208.0	[0..2]	[209..13]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNKLARQI IDTCLEMTRL GLNQGTAGNV SVRYQDGMLI TPTGIPYEKL TESHIVFIDG  60
   61 NGKHEEGKLP SSEWRFHMAA YQSRPDANAV VHNHAVHCTA VSILNRSIPA IHYMIAAAGG 120
  121 NSIPCAPYAT FGTRELSEHV ALALKNRKAT LLQHHGLIAC EVNLEKALWL AHEVEVLAQL 180
  181 YLTTLAITDP VPVLSDEEIA VVLEKFKTYG LRIEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	1dzwP
Description:	L-fuculose-1-phosphate aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-ribulose-phosphate 4-epimerase activity	3.50507333471987	bayes_pls_golite062009
L-fuculose-phosphate aldolase activity	2.43949811564444	bayes_pls_golite062009
catalytic activity	1.9511172460719	bayes_pls_golite062009
aldehyde-lyase activity	1.08084403816388	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.42493443904865	bayes_pls_golite062009
racemase and epimerase activity	0.15063402811264	bayes_pls_golite062009
isomerase activity	0.0458367676418101	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: