YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187429405, gi...
Organism:	Shigella boydii CDC 3083-94
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187429405, gi....

Description	E-value	Query Range	Subject Range
gi\|82778934, gi\|... - gi\|82778934\|ref\|YP_405283.1\| formate dehydrogenase-O, iron-sulfur subunit [Shigella dysenteriae Sd19...	288.0	[0..1]	[300..1]
gi\|189001488, gi... - gi\|189001488\|gb\|EDU70474.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|168786742, gi... - gi\|189373333\|gb\|EDU91749.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|209752562, gi... - pir\|\|C91231 formate dehydrogenase-O iron-sulfur subunit [imported] - Escherichia coli (strain O157:H... gi\|189378011, gi... - gi\|189378011\|gb\|EDU96427.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|13364295, gi\|... - gi\|15834073\|ref\|NP_312846.1\| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli O157:H7],... gi\|195937533 - gi\|195937533\|ref\|ZP_03082915.1\| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli O157:H... gi\|168755571, gi... - gi\|189357170\|gb\|EDU75589.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|168761730, gi... - gi\|189367938\|gb\|EDU86354.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|189362637, gi... - gi\|189362637\|gb\|EDU81056.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|187769120, gi... - gi\|187769120\|gb\|EDU32964.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|188016796, gi... - gi\|188016796\|gb\|EDU54918.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|254795888, gi... - gi\|254795888\|ref\|YP_003080725.1\| formate dehydrogenase-O, Fe-S subunit [Escherichia coli O157:H7 str... gi\|13364295, gi\|... - gi\|15834073\|ref\|NP_312846.1\| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli O157:H7 s... gi\|217320883, gi... - gi\|217324662\|ref\|ZP_03440746.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:... gi\|208808903, gi... - gi\|208808903\|ref\|ZP_03251240.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:... gi\|208735217, gi... - gi\|208813940\|ref\|ZP_03255269.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:... gi\|208818459, gi... - gi\|208818459\|ref\|ZP_03258779.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:... gi\|209160203, gi... - gi\|209398803\|ref\|YP_002273410.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157...	288.0	[0..1]	[300..1]
gi\|83569843, gi\|... - gi\|83569843\|ref\|ZP_00921292.1\| COG0437: Fe-S-cluster-containing hydrogenase components 1 [Shigella d...	288.0	[0..1]	[300..1]
gi\|194414507, gi... - gi\|75211293\|ref\|ZP_00711392.1\| COG0437: Fe-S-cluster-containing hydrogenase components 1 [Escherichi...	286.0	[0..1]	[300..1]
gi\|25285347 - pir\|\|B86078 formate dehydrogenase-O, iron-sulfur subunit [imported] - Escherichia coli (strain O157:... gi\|12518785, gi\|... - gi\|15804482\|ref\|NP_290522.1\| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli O157:H7 ...	285.0	[0..1]	[300..1]
gi\|37528694, gi\|... - gi\|37528694\|ref\|NP_932039.1\| formate dehydrogenase-O, iron-sulfur subunit (formate dehydrogenase-O b...	280.0	[0..1]	[298..1]
gi\|197364811, gi... - gi\|197364811\|ref\|YP_002144448.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. en... gi\|56415882, gi\|... - gi\|56415882\|ref\|YP_152957.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. enteri...	272.0	[0..1]	[300..1]
gi\|238912180 - gi\|238912180\|ref\|ZP_04656017.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica su... gi\|16422599, gi\|... - gi\|16767301\|ref\|NP_462916.1\| formate dehydrogenase-O beta subunit [Salmonella typhimurium LT2], gi\|1... gi\|197240000, gi... - gi\|197261745\|ref\|ZP_03161819.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica su... gi\|204320614, gi... - gi\|204930210\|ref\|ZP_03221187.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica su... gi\|205341794, gi... - gi\|205341794\|gb\|EDZ28558.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica subsp.... gi\|194451151, gi... - gi\|194451151\|ref\|YP_002048037.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica s... gi\|168244219, gi... - gi\|205336904\|gb\|EDZ23668.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica subsp.... gi\|168467369, gi... - gi\|195630226\|gb\|EDX48866.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=fdoH] [protein=formate dehydrogenase-O beta subunit] [protein_id=YP_005240304.1] [location=com... gi\|167991561, gi... - gi\|205329943\|gb\|EDZ16707.1\| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica subsp....	270.0	[0..1]	[300..1]
gi\|16762397 - gi\|16762397\|ref\|NP_458014.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. enteri... gi\|213586799 - gi\|213586799\|ref\|ZP_03368625.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. ent... gi\|213647352 - gi\|213647352\|ref\|ZP_03377405.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. ent... gi\|213852523 - gi\|213852523\|ref\|ZP_03382055.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. ent... gi\|214002290 - gi\|214002290\|ref\|ZP_03413025.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. ent... gi\|213052176 - gi\|213052176\|ref\|ZP_03345054.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. ent... gi\|25285341, gi\|... - gi\|25285341\|pir\|\|AC0946 formate dehydrogenase-O beta chain [imported] - Salmonella enterica subsp. e... gi\|29139521, gi\|... - gi\|29143885\|ref\|NP_807227.1\| formate dehydrogenase-O beta subunit [Salmonella enterica subsp. enteri...	269.0	[0..1]	[300..1]
gi\|62130129, gi\|... - gi\|62182496\|ref\|YP_218913.1\| formate dehydrogenase-O, Fe-S subunit [Salmonella enterica subsp. enter...	269.0	[0..1]	[300..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQSQDIIR RSATNGLTPA PQARDFQEEV AKLIDVTTCI GCKACQVACS EWNDIRDTVG  60
   61 NNIGVYDNPN DLSAKSWTVM RFSEVEQNDK LEWLIRKDGC MHCSDPGCLK ACPAEGAIIQ 120
  121 YANGIVDFQS EQCIGCGYCI AGCPFDIPRL NPEDNRVYKC TLCVDRVVVG QEPACVKTCP 180
  181 TGAIHFGTKE SMKTLASERV AELKTRGYDN AGLYDPAGVG GTHVMYVLHH ADKPNLYHGL 240
  241 PENPEISETV KFWKGIWKPL AAVGFAATFA ASIFHYVGVG PNRADEEENN LHEEKDEERK 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.39794
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	10.9674358961972	bayes_pls_golite062009
oxidoreductase activity	5.98361135786786	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.77927347135001	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.39747453448396	bayes_pls_golite062009
electron carrier activity	5.05393703018095	bayes_pls_golite062009
NADH dehydrogenase activity	3.13953145151561	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	2.76338281383262	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	2.70037803782769	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.09041948600744	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.80621486978907	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	1.5619384041388	bayes_pls_golite062009
iron-sulfur cluster binding	1.30496569995148	bayes_pls_golite062009
metal cluster binding	1.30496569995148	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: