YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83588505, gi\|...
Organism:	Escherichia coli 101-1
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83588505, gi|....

Description	E-value	Query Range	Subject Range
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	219.0	[0..2]	[207..38]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	216.0	[0..5]	[207..50]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	215.0	[0..5]	[207..49]
gi\|88865115, gi\|... - gi\|89055566\|ref\|YP_511017.1\| ABC transporter related [Jannaschia sp. CCS1], gi\|88865115\|gb\|ABD55992....	215.0	[0..3]	[203..29]
gi\|77976210 - gi\|77976210\|ref\|ZP_00831724.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	214.0	[0..3]	[203..63]
gi\|27382307, gi\|... - gi\|27382307\|ref\|NP_773836.1\| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]...	214.0	[0..3]	[203..48]
gi\|48835579 - ref\|ZP_00292578.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [The... POTA_THEFY - Spermidine/putrescine import ATP-binding protein PotA OS=Thermobifida fusca (strain YX) GN=potA PE=3...	214.0	[0..3]	[202..54]
gi\|86358496, gi\|... - gi\|86358496\|ref\|YP_470388.1\| ABC transporter ATP-binding protein [Rhizobium etli CFN 42], gi\|8628259...	213.0	[0..3]	[203..28]
gi\|25522004 - pir\|\|AH3211 hypothetical protein potG [imported] - Agrobacterium tumefaciens (strain C58, Dupont) pl... gi\|17939006, gi\|... - gi\|17939006\|ref\|NP_535794.1\| ABC transporter, nucleotide binding/ATPase protein [putrescine] [Agroba...	213.0	[0..2]	[203..28]
POTA_PSYCK - Spermidine/putrescine import ATP-binding protein PotA OS=Psychrobacter cryohalolentis (strain K5) GN...	213.0	[0..2]	[207..45]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQGTLYIVS APSGAGKSSL IQALLKTQPL YDTQVSVSHT TRQPRPGEVH GEHYFFVNHD  60
   61 EFKEMISRDA FLEHAEVFGN YYGTSREAIE QVLATGVDVF LDIDWQGAQQ IRQKMPHARS 120
  121 IFILPPSKIE LDRRLRGRGQ DSEEVIAKRM AQAVAEMSHY AEYDYLIVND DFDTALTDLK 180
  181 TIIRAERLRM SRQKQRHDAL ISKLLAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.30103
Match:	1s96A
Description:	The 2.0 A X-ray structure of Guanylate Kinase from E.coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.66392587433723	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.47528445676761	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.55741461337855	bayes_pls_golite062009
substrate-specific transporter activity	2.54103332067513	bayes_pls_golite062009
binding	2.44689197844883	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.40650518173039	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.92480060698169	bayes_pls_golite062009
ion transmembrane transporter activity	1.69194088788064	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.60317778681063	bayes_pls_golite062009
cation transmembrane transporter activity	1.48327844851166	bayes_pls_golite062009
nucleic acid binding	1.08697924060619	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
DNA binding	0.702147676354075	bayes_pls_golite062009
adenylate kinase activity	0.447752711852745	bayes_pls_golite062009
transcription regulator activity	0.287777990975748	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009
protein binding	0.071010918255742	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: