| Protein: | nhr-110 |
| Organism: | Caenorhabditis elegans |
| Length: | 424 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-110.
| Description | E-value | Query Range |
Subject Range |
|
|
273.0 | [0..11] | [423..97] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MDDSTVFCSS LQTDPVSASE LGAIKCQVCF LPGHGIHFGA YTCRACAAFF RIVSISKSKC 60
61 HFSPRPTHKC RNNSNCKPKI DGRWFCKTCR LTRCLSIGMS PENIQYDRDK FESILKSSKN 120
121 N
|
| Detection Method: |  |
| Confidence: | 18.69897 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [122-424] |
1 11 21 31 41 51
| | | | | |
1 RHLQIPNTVE SQLCISPLVS FSNRREKSSK CIDISQIVKK AVAKLLNPAM IRNIDSTSNL 60
61 EQLTSGFKNL QSGQKENIPK IDHITLAHQT QHFNSSMCSA AVWLGYSDRF KTYSDMQKIK 120
121 VLQAIWCIWG RLEGIVMTAK MRIIGKCEKE QFFLTSDTLI VYDNFSSDLD YCSTYPFEEM 180
181 KYFFIPREMF HEDVISELVK VQPDDVETTY LMSVVCLQLT GKRYGGLIQE EMEQFQDILS 240
241 NDLHEYYINN KMPKYLLRIK QLMRVKEMFL RNLNIRMEKY KIAGVFNVFN RPISNLEFFT 300
301 VPI
|
| Detection Method: | |
| Confidence: | 31.39794 |
| Match: | 1navA |
| Description: | Thyroid hormone receptor alpha1 (TR-alpha1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| signal transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| molecular transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
