YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56966219, gi\|...
Organism:	Escherichia coli
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56966219, gi|....

Description	E-value	Query Range	Subject Range
gi\|15978163, gi\|... - gi\|16120401\|ref\|NP_403714.1\| phosphopantothenoylcysteine synthase/decarboxylase [Yersinia pestis CO9... gi\|150260888, gi... - gi\|150260888\|ref\|ZP_01917616.1\| DNA/pantothenate metabolism flavoprotein [Yersinia pestis CA88-4125]... gi\|51594403, gi\|... - gi\|51594403\|ref\|YP_068594.1\| phosphopantothenoylcysteine synthase/decarboxylase [Yersinia pseudotube... Q66GD7\|Q66GD7_YERPS - DNA/pantothenate metabolism flavoprotein - Yersinia pseudotuberculosis gi\|165936230, gi... - gi\|165936230\|ref\|ZP_02224799.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|45434769, gi\|... - gi\|45439914\|ref\|NP_991453.1\| phosphopantothenoylcysteine synthase/decarboxylase [Yersinia pestis bio... gi\|25322282 - pir\|\|AI0006 DNA/pantothenate metabolism flavoprotein [imported] - Yersinia pestis (strain CO92)	293.0	[0..1]	[225..183]
gi\|77630874 - gi\|77630874\|ref\|ZP_00793460.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin...	293.0	[0..1]	[225..183]
gi\|22124013, gi\|... - gi\|22124013\|ref\|NP_667436.1\| phosphopantothenoylcysteine synthase/decarboxylase [Yersinia pestis KIM... gi\|145212793, gi... - gi\|145601097\|ref\|YP_001165173.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopanto... gi\|165926067, gi... - gi\|165926067\|ref\|ZP_02221899.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|166213762, gi... - gi\|166213762\|ref\|ZP_02239797.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|166011425, gi... - gi\|166011425\|ref\|ZP_02232323.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|167418905, gi... - gi\|167418905\|ref\|ZP_02310658.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|167402115, gi... - gi\|167402115\|ref\|ZP_02307592.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|186893391, gi... - gi\|186893391\|ref\|YP_001870503.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyst... gi\|89103898 - gi\|89103898\|ref\|ZP_01176458.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin... gi\|167426675, gi... - gi\|167426675\|ref\|ZP_02318428.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|108809485, gi... - gi\|108809485\|ref\|YP_653401.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe... gi\|77634073, gi\|... - gi\|77634073\|ref\|ZP_00796182.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin... gi\|108813962, gi... - gi\|108813962\|ref\|YP_649729.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe...	293.0	[0..1]	[225..221]
gi\|77961978, gi\|... - gi\|77961978\|ref\|ZP_00825805.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin...	292.0	[0..1]	[225..183]
gi\|37528675, gi\|... - gi\|37528675\|ref\|NP_932020.1\| phosphopantothenoylcysteine synthase/decarboxylase [Photorhabdus lumine...	290.0	[0..2]	[226..184]
gi\|91213156, gi\|... - gi\|91213156\|ref\|YP_543142.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothen... gi\|115515035, gi... - gi\|117625911\|ref\|YP_859234.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe... gi\|237703410, gi... - gi\|237703410\|ref\|ZP_04533891.1\| pantothenate metabolism flavoprotein Dfp [Escherichia sp. 3_2_53FAA]...	287.0	[0..1]	[226..205]
gi\|209754632, gi... - pir\|\|A65165 pantothenate metabolism flavoprotein dfp - Escherichia coli (strain K-12), pir\|\|C86040... gi\|30043346, gi\|... - gi\|30065085\|ref\|NP_839256.1\| phosphopantothenoylcysteine synthase/decarboxylase [Shigella flexneri 2... gi\|15833768, gi\|... - gi\|15833768\|ref\|NP_312541.1\| phosphopantothenoylcysteine synthase/decarboxylase [Escherichia coli O1... gi\|26110715, gi\|... - gi\|26250285\|ref\|NP_756325.1\| phosphopantothenoylcysteine synthase/decarboxylase [Escherichia coli CF... gi\|1790070, gi\|4... - gi\|49176381\|ref\|NP_418096.3\| phosphopantothenoylcysteine synthase/decarboxylase [Escherichia coli K1... gi\|15833768, gi\|... - gi\|15833768\|ref\|NP_312541.1\| phosphopantothenoylcysteine synthase/decarboxylase [Escherichia coli O1... gi\|208813668, gi... - gi\|208813668\|ref\|ZP_03254997.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|209157232, gi... - gi\|209395832\|ref\|YP_002273117.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyst... gi\|15804180, gi\|... - gi\|15804180\|ref\|NP_290219.1\| phosphopantothenoylcysteine synthase/decarboxylase [Escherichia coli O1...	287.0	[0..1]	[226..205]
gi\|290489 - gi\|290489\|gb\|AAA61992.1\| dfp (CG Site No. 18430)	287.0	[0..1]	[226..205]
gi\|54307422, gi\|... - gi\|54307422\|ref\|YP_128442.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothen...	286.0	[0..5]	[226..191]
gi\|81243277, gi\|... - gi\|82779129\|ref\|YP_405478.1\| Dfp [Shigella dysenteriae Sd197], gi\|81243277\|gb\|ABB63987.1\| Dfp [Shige...	286.0	[0..1]	[226..205]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPVNDLKHLN IMITAGPTRE PLDPVRYISD HSSGKMGFAI AAAAARRGAN VTLVSGPVSL  60
   61 PTPPFVKRVD VMTALEMEAA VNASVQQQNI FIGCAAVADY RAATVAPEKI KKQATQGDEL 120
  121 TIKMVKNPDI VAGVAALKDH RPYVVGFAAE TNNVEEYARQ KRIRKNLDLI CANDVSQPTQ 180
  181 GFNSDNNALH LFWQDGDKVL PLERKELLGQ LLLDEIVTRY DEKNRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1u7uA
Description:	Phosphopantothenoylcysteine synthetase from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.793648048433872	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: