| Protein: | nht-PB |
| Organism: | Drosophila melanogaster |
| Length: | 245 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nht-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
319.0 | [0..1] | [245..1] |
|
|
227.0 | [0..48] | [242..643] |
|
|
226.0 | [0..47] | [242..871] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MSIISLEVPI QPYAGQLLII NDLILPDSGS QDASKAKVSI KKNQRASFFD RSSIYKKIMK 60
61 HLSQGNQADD INISEQEWLL DSFLAALETY MKHVVKKTIE LCEHRTSYHL HNDERCVMKN 120
121 DMRVTMMFLN DLEIADYGSS
|
| Detection Method: |  |
| Confidence: | 13.221849 |
| Match: | 1h3oA |
| Description: | TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 9.25279783093877 | bayes_pls_golite062009 |
| DNA binding | 4.24625687315724 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| transcription initiation factor activity | 3.96621818094279 | bayes_pls_golite062009 |
| nucleic acid binding | 3.93473976418251 | bayes_pls_golite062009 |
| binding | 3.79827182235984 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| transcription factor activity | 2.31114764804139 | bayes_pls_golite062009 |
| protein binding | 1.2861218811362 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10331930589736 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0792897588268993 | bayes_pls_golite062009 |
|
Region A: Residues: [141-245] |
1 11 21 31 41 51
| | | | | |
1 DDETGFYRKR RAENIDEERK VARLESVNDT ALLAISGRKR PGEQLAPESA PSGSKVAKLT 60
61 GAPIQRACAP RFKHMNIRDV LQFMEEDRRY ARSNMLFEAY LKYKS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.355 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.206 | N/A | N/A | c.55.3 | Ribonuclease H-like |
