| Protein: | clec-236 |
| Organism: | Caenorhabditis elegans |
| Length: | 556 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-236.
| Description | E-value | Query Range |
Subject Range |
|
|
225.0 | [0..21] | [553..664] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MLSINSIAAG TITSCWSDVF SKQSRKRSMI LAFILTLLVV PDGTNGMIFS EFLKNYRDLV 60
61 DISSLKTCWM LGGDGIQQVN PKNEQKGYQC TVKLRAWSTN EKDVKDACMS RIPYYITHAK 120
121 PENAETSCTF QMNLH
|
| Detection Method: |  |
| Confidence: | 7.522879 |
| Match: | 1tozA |
| Description: | NMR structure of the human NOTCH-1 ligand binding region |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-333] |
1 11 21 31 41 51
| | | | | |
1 CDDNYWQIHG RCYRVFDGKY TFEEAQQIKL NILLNDMEGI YDAWVTVPNI KDYFTNGQGE 60
61 AEVYVQDSAY KYDVRPGSIM MDRLEGRHQV LCEYKPAMTM AEMFYMAKLY SEIYPIHVYT 120
121 HGAIFTSASY LTVTQRSLIK NTGGPTQYGD EIEKFDTSEL NEKCKLLGNI LNVDSIPMVP 180
181 TENEQNYVKH LLTDHQFY
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1bj3A |
| Description: | Snake coagglutinin alpha chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13629480035749 | bayes_pls_golite062009 |
| carbohydrate binding | 0.44675717945952 | bayes_pls_golite062009 |
| protein binding | 0.059857076934361 | bayes_pls_golite062009 |
|
Region A: Residues: [334-405] |
1 11 21 31 41 51
| | | | | |
1 MTSGFKSDGC GRGDYRTQQD GNTSTSFDSI GSNDEYCHAH RNGRYPTMAA MRAPAICAMH 60
61 EFSWSHGDCD PK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [406-556] |
1 11 21 31 41 51
| | | | | |
1 PEWAEEMLVY NRTSESVFCH YVDETEKITY YEAKARCNSF GAELTGFDSR DEWVAVSKTL 60
61 KTCHHWTGGI TKYKSYNVPE IIWDAGVATN TDYFTDVYFQ TTLPDEHLSL LWSEAHVHPT 120
121 YRNYMYMCTI CGKAAKLVRS EGKVYGLKTT G
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 2h2rA |
| Description: | No description for 2h2rA was found. |
