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View Structure Prediction Details

Protein: CE39320
Organism: Caenorhabditis elegans
Length: 385 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39320.

Description E-value Query
Range
Subject
Range
gi|88925520, gi|... - gi|88944849|ref|ZP_01148072.1| proline dehydrogenase, beta subunit [Desulfotomaculum reducens MI-1],...
230.0 [0..2] [384..1]

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Predicted Domain #1
Region A:
Residues: [1-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGKAYDVIV VGAGIFGSCT AYHCQRLGLR TLLLEQYSLG HSNGSSHGKS RIIRYAHTDP  60
   61 EYVPLVGDSY LQIEELEKKR GEKLWNKLGL LWAATGNQVD SISGHLKKHN IDHEVLPGTK 120
  121 ITERYPQFKF DDKWTALIDP MGGVIYANKW LKAFQEEFIT LGGTIQDNEP VISYGETDNV 180
  181 IVNVKTSTGE YKTNKIIFTV GCWITKFFPN VNFQIKPISL AVCYWNAKDE KNNHLLDEKH 240
  241 FPVVIAKNLE KKEYFFALPD TDYPGAIKLV LDEGDDLAGD LSHPTKNNQE LVTIPGSFIK 300
  301 DHIPVIDGSS PYKVDQCKYT NSPDHHYLIG PVSSENSKIL VGGCGSGSGF KTAPGIGRSL 360
  361 AEMAAGKSTT VDVTFFSPSR FETPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.39794
Match: 1el5A
Description: Sarcosine oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.61125987248836 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.07245967881566 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity 0.943208146517927 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.681230241795345 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 0.397770205910041 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle