YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40354
Organism: Caenorhabditis elegans
Length: 796 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40354.

Description E-value Query
Range
Subject
Range
CE40355 - status:Partially_confirmed UniProt:Q19426 protein_id:CAL36500.1
675.0 [0..8] [796..1]

Back

Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHREHEEMHQ PSRRRRPPRE VERPSATIRY EPVAEPEPWC SFCSWDLILI LLVMLGAGCF  60
   61 ILLHLYLYP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEKVAPLPN IDPENAPYTW GTYRPHMYFG LRTRSPMSPL FGMMWYEQPN TIQRPHIRHW  60
   61 CNQDDRLPGY YWY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [143-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EADGRHFGKQ NISEAHKGVI QTDWINDANG FAARVKLNMA PGRRYNVILY LSAQEIGTRF  60
   61 RLGKHLSDVF HGYNELLGKF TMSLRLKDNT KLQTSHSVML TDEKIPIDRY HDFVVDNTQA 120
  121 YNAPNQPLNY ILNEKHNDEE GKFIAVQLNL GSQAEFDIIL QTEKLKGMKP EEFTNILRIR 180
  181 SYNFNKKYEN VFQLAGKNYT KTQLKMAKVS LSNMLGSVGY WYGHNRVLFN GIVQPYGPHV 240
  241 LFSAVPSRPF FPRGFLWDEG FHQMLIRKMD SKMTLEAIAS WMNAMDTSGW IPREMIVGSE 300
  301 AEAKVPAEFI PQKNDVANPP TLFYVMDKLV NDEKTVGRYA GILKLLYPRL EKWFHWIRIT 360
  361 QSGPTRTTYR WRGRNETIKT ELNPKTLSSG LDDFPRASHP SDLEYHLDLR CWLALASRVL 420
  421 NRLAKSYGTD ADYQRTAKAM EELNNFDSLV KDHWSEEAQG FFDYGKHSFD VALSPVPTPG 480
  481 SPRQFEYQRV TSRAPSYTLV SDAFGYNNLF PMMLKLIPSK SPILKSMLDK IRDPKILWTN 540
  541 YGLRSISRSS PYYMARNTEH DPPYWRGYIW INVNYMVLSS LRHYADQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.221849
Match: 1v7vA
Description: Crystal structure of Vibrio proteolyticus chitobiose phosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
mannosidase activity 1.49291191891452 bayes_pls_golite062009
mannosyl-oligosaccharide mannosidase activity 1.2451852965943 bayes_pls_golite062009
binding 1.09154723976574 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 1.06639948523809 bayes_pls_golite062009
catalytic activity 0.770933849734279 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.68102716507433 bayes_pls_golite062009
racemase and epimerase activity 0.473636146090495 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.46543608238103 bayes_pls_golite062009
trehalase activity 0.389375574251869 bayes_pls_golite062009
protein binding 0.211409325631147 bayes_pls_golite062009
alpha,alpha-trehalase activity 0.17719034423607 bayes_pls_golite062009
isomerase activity 0.106573908779409 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [731-796]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPYRENAENI FSELRANLVK NLATQFQKTG FLWENYDDRT GEGRGCHPFT GWSSLILLIM  60
   61 SDNLDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 2ds3A
Description: No description for 2ds3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle