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View Structure Prediction Details

Protein: CE39235
Organism: Caenorhabditis elegans
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39235.

Description E-value Query
Range
Subject
Range
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...
718.0 [0..20] [506..1]

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Predicted Domain #1
Region A:
Residues: [1-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQCRRLAST SAAATVTQKQ RFRPVIGLEI HVQLNTLTKL FSRCPTSESS PNRRVDAFDM  60
   61 ATPGILPALN RQCVLRALKM ARILHCQVPK SSRFDRKHYF YADMPAGYQI TQNEKPIAKN 120
  121 GKFGFWVFDE RIEVPYWKEV EILQLQLEQD SGKTIHMTSQ AAPPTSLIDY NRAGCALVEI 180
  181 VTSPCFTTAI EAIRFVQILR LLLIHHAICD GELHRGHIRV DANVSLAKDD VWGTRTEIKN 240
  241 MNSIRTIHTA INYEIARQFE ILKNGGAVQN ETRAADSEGR TVSMRDKETE ETDYRFMVEP 300
  301 NLPQLKIHGK WLKEVEEELK CEGKADFEVL REDVGFDARS AVHIAEEPEL LSFVKRCIRY 360
  361 KAPTVTPVDI LYWMKELKTV MQRSKANYPP QSEFFARQFT TLLKFSSEHR LTRLRLLDLL 420
  421 RHYATDDDVM AGELEILIEE NRYWRIRAPA EIDEIVRKSM EKQEKLVEKC RSGHVKSFNR 480
  481 LRNSIIDSSN KCIELEDLEA SIRRLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2df4B
Description: No description for 2df4B was found.

Predicted functions:

Term Confidence Notes
ligase activity 5.28014676041088 bayes_pls_golite062009
catalytic activity 1.08973967683802 bayes_pls_golite062009
ammonia ligase activity 0.978763138251862 bayes_pls_golite062009
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 0.873485093374459 bayes_pls_golite062009
acid-ammonia (or amide) ligase activity 0.632807059205458 bayes_pls_golite062009
binding 0.601875498896385 bayes_pls_golite062009
nucleic acid binding 0.545649763280687 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0373860162850559 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle