YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125807922, gi...
Organism:	Drosophila pseudoobscura
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125807922, gi....

Description	E-value	Query Range	Subject Range
gi\|56203991, gi\|... - gi\|56204931\|emb\|CAI23309.1\| dynein, light chain, roadblock-type 1 [Homo sapiens], gi\|56203991\|emb\|CA...	167.0	[0..3]	[97..54]
gi\|109129304 - gi\|109129304\|ref\|XP_001111256.1\| PREDICTED: similar to dynein, cytoplasmic, light polypeptide 2B iso...	162.0	[0..3]	[97..31]
gi\|50753873 - gi\|50753873\|ref\|XP_414162.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B; dynein, cyto...	162.0	[0..3]	[97..67]
gi\|157109684, gi... - gi\|157109684\|ref\|XP_001650782.1\| dynein light chain, putative [Aedes aegypti], gi\|108878966\|gb\|EAT43... gi\|167869847, gi... - gi\|170031427\|ref\|XP_001843587.1\| dynein light chain [Culex quinquefasciatus], gi\|167869847\|gb\|EDS332...	159.0	[0..1]	[97..1]
gi\|58382053, gi\|... - gi\|58385864\|ref\|XP_314262.2\| ENSANGP00000018736 [Anopheles gambiae str. PEST], gi\|58382053\|ref\|XP_31...	157.0	[0..1]	[97..4]
gi\|57087115 - gi\|57087115\|ref\|XP_536771.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Canis famili... tr\|G1SVF4\|G1SVF4... - Uncharacterized protein OS=Oryctolagus cuniculus GN=DYNLRB2 PE=4 SV=2 DLRB2_BOVIN - Dynein light chain roadblock-type 2 OS=Bos taurus GN=DYNLRB2 PE=3 SV=1	155.0	[0..3]	[97..2]
DLRB2_MOUSE - Dynein light chain roadblock-type 2 OS=Mus musculus GN=Dynlrb2 PE=1 SV=1 gi\|149038273, gi... - gi\|62665323\|ref\|XP_341695.2\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Rattus norve...	153.0	[0..4]	[97..3]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEVEETLK RIQSHKGVVG TIVVNNEGIP VKSTLDNTTT VQYAGLMSQL ADKARSVVRD  60
   61 LDPSNDMTFL RVRSKKHEIM VAPDKDFILI VIQNPTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2hz5A
Description:	No description for 2hz5A was found.

Predicted functions:

Term	Confidence	Notes
microtubule motor activity	8.18470385551478	bayes_pls_golite062009
motor activity	3.85089831298179	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.81559854902425	bayes_pls_golite062009
pyrophosphatase activity	1.74519084997844	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.72698970579724	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.7246708860722	bayes_pls_golite062009
binding	1.56878172148951	bayes_pls_golite062009
ATPase activity, coupled	1.30095734520605	bayes_pls_golite062009
ATPase activity	1.29084652628352	bayes_pls_golite062009
protein binding	0.961213514680322	bayes_pls_golite062009
hydrolase activity	0.650567173011682	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: