| Protein: | DPB_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 385 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPB_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..8] | [370..30] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS 60
61 DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAG
|
| Detection Method: |  |
| Confidence: | 0.972 |
| Match: | 1jk0A |
| Description: | Ribonucleotide reductase R2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [97-186] |
1 11 21 31 41 51
| | | | | |
1 PDKTGRGLRQ FSMKVCEKVE SKGRTTYNEV ADELVAEFAL PNNDGTSPDQ QQYDEKNIRR 60
61 RVYDALNVLM AMDIISKDKK EIQWRGLPRT
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1cf7B |
| Description: | Cell cycle transcription factor DP-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [187-385] |
1 11 21 31 41 51
| | | | | |
1 SLSDIEELKN ERLSLRNRIE KKTAYSQELE EQYVGLQNLI QRNEHLYSSG NAPSGGVALP 60
61 FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNFV LKTMKFCDQP PQQPNGRNNS 120
121 QLVCHNFTPE NPNKGPSTGP TPQLDMYETH LQSQQHQQHS QLQIIPMPET NNVTSSADTA 180
181 PVKSPSLPGI MNSSMKPEN
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
