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View Structure Prediction Details

Protein: SCP46_ARATH
Organism: Arabidopsis thaliana
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP46_ARATH.

Description E-value Query
Range
Subject
Range
gi|25289793, gi|... - pir||F84746 probable serine carboxypeptidase II [imported] - Arabidopsis thaliana, gi|2459435|gb|AAB...
450.0 [0..1] [465..1]

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Predicted Domain #1
Region A:
Residues: [1-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLQCLTMA TSLILLLQAL SLVSSTILSR ADRITRLPGQ PRVGFQQYSG YVTIDEKKQR  60
   61 ALFYYLAEAE TKPISKPLVL WLNGGPGCSS LGVGAFSENG PFRPKGSILV RNQHSWNQEA 120
  121 NMLYLETPVG VGFSYANESS SYEGVNDKIT AKDNLVFLQK WFLKFPQYLN RSLFITGESY 180
  181 AGHYVPQLAQ LMIQYNKKHN LFNLKGIAIG NPVMEFATDF NSRAEYFWSH GLISDPTYKL 240
  241 FTSSCNYSRF LSEYHRGSVS SMCTKVLSQV GIETSRFIDK YDVTLDVCIP SVLSQSKVVS 300
  301 PQPQQVGETV DVCLEDETVN YLNRRDVQKA LHARLVGTRK WTVCSDVLDY EVLDVEVPTI 360
  361 NIVGSLVKAG VPVFVYSGDQ DSVIPLTGSR TLVKRLAEEL GLRTTVPYRV WFAGQQVGGW 420
  421 TQVYGNTLAF ATVRGAAHEV PFSQPARALV LFKAFLGGRP LPEEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.154902
Match: 1ivyA
Description: Human 'protective protein', HPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.01438408843885 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
endopeptidase activity 0.35106325845064 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle