YRC Public Data Repository - Protein Structure Prediction

Protein:	HSLV_ECOLI
Organism:	Escherichia coli
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSLV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|148229628, gi... - gi\|37589390\|gb\|AAH59335.1\| MGC69086 protein [Xenopus laevis], gi\|148229628\|ref\|NP_001080028.1\| low m...	167.0	[0..2]	[175..67]
HSLV_PSEA6 - ATP-dependent protease subunit HslV OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=h...	166.0	[0..1]	[173..1]
gi\|109070671 - gi\|109070671\|ref\|XP_001115562.1\| PREDICTED: similar to proteasome beta 8 subunit isoform E2 proprote...	166.0	[0..2]	[175..73]
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	165.0	[0..2]	[175..73]
HSLV_IDILO - ATP-dependent protease hslV OS=Idiomarina loihiensis GN=hslV PE=3 SV=1 HSLV_IDILO - ATP-dependent protease subunit HslV OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-T...	164.0	[0..1]	[171..1]
gi\|90580883, gi\|... - gi\|90580883\|ref\|ZP_01236685.1\| ATP-dependent protease peptidase subunit [Vibrio angustum S14], gi\|90... gi\|89049007, gi\|... - gi\|89075185\|ref\|ZP_01161616.1\| ATP-dependent protease peptidase subunit [Photobacterium sp. SKA34], ...	164.0	[0..1]	[173..1]
gi\|56754849 - gi\|56754849\|gb\|AAW25607.1\| SJCHGC06118 protein [Schistosoma japonicum]	164.0	[0..2]	[175..39]
gi\|49077212, gi\|... - gi\|71021599\|ref\|XP_761030.1\| hypothetical protein UM04883.1 [Ustilago maydis 521], ref\|XP_402498.1\| ...	164.0	[0..2]	[174..28]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIVSVRRN GHVVIAGDGQ ATLGNTVMKG NVKKVRRLYN DKVIAGFAGG TADAFTLFEL  60
   61 FERKLEMHQG HLVKAAVELA KDWRTDRMLR KLEALLAVAD ETASLIITGN GDVVQPENDL 120
  121 IAIGSGGPYA QAAARALLEN TELSAREIAE KALDIAGDIC IYTNHFHTIE ELSYKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1nedA
Description:	HslV (ClpQ) protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
endopeptidase activity	2.91106083708276	bayes_pls_golite062009
peptidase activity	2.80801539616396	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.73190506268595	bayes_pls_golite062009
hydrolase activity	2.31204586693758	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: