YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_PSEPU
Organism:	Pseudomonas putida
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_PSEPU.

Description	E-value	Query Range	Subject Range
RNPA_PSEPF - Ribonuclease P protein component OS=Pseudomonas fluorescens (strain Pf0-1) GN=rnpA PE=3 SV=1	137.0	[0..1]	[133..1]
gi\|82716330, gi\|... - gi\|82736599\|ref\|ZP_00899456.1\| ribonuclease P protein [Pseudomonas putida F1], gi\|82716330\|gb\|EAP513...	135.0	[0..1]	[133..33]
RNPA_PSESM - Ribonuclease P protein component OS=Pseudomonas syringae pv. tomato GN=rnpA PE=3 SV=1 RNPA_PSESM - Ribonuclease P protein component OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rnpA PE=3 SV=... gi\|213968443, gi... - gi\|213968443\|ref\|ZP_03396586.1\| ribonuclease P protein component [Pseudomonas syringae pv. tomato T1...	132.0	[0..1]	[133..1]
RNPA_PSE14 - Ribonuclease P protein component OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) ...	132.0	[0..1]	[133..1]
tr\|I7BRH9\|I7BRH9... - Ribonuclease P protein component OS=Pseudomonas putida (strain DOT-T1E) GN=rnpA PE=3 SV=1 gi\|24981343, gi\|... - gi\|26986753\|ref\|NP_742178.1\| ribonuclease P [Pseudomonas putida KT2440], gi\|24981343\|gb\|AAN65642.1\|A... tr\|E4R9L4\|E4R9L4... - Ribonuclease P protein component OS=Pseudomonas putida (strain BIRD-1) GN=rnpA PE=3 SV=1 RNPA_PSEP1 - Ribonuclease P protein component OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rnpA PE=3 SV=1	131.0	[0..1]	[133..2]
gi\|49077256 - gi\|49077256\|gb\|AAT49655.1\| PA5569 [synthetic construct]	131.0	[0..1]	[129..2]
RNPA_PSEAE - Ribonuclease P protein component OS=Pseudomonas aeruginosa GN=rnpA PE=3 SV=1 RNPA_PSEAB - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rnpA PE=3 SV=1 RNPA_PSEAE - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ... gi\|126196491, gi... - gi\|84324747\|ref\|ZP_00972802.1\| COG0594: RNase P protein component [Pseudomonas aeruginosa 2192], gi\|... gi\|107104670 - gi\|107104670\|ref\|ZP_01368588.1\| hypothetical protein PaerPA_01005749 [Pseudomonas aeruginosa PACS2]	131.0	[0..1]	[129..2]
RNPA_PSEA7 - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain PA7) GN=rnpA PE=3 SV=1	130.0	[0..1]	[129..2]
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1	128.0	[0..1]	[118..2]
gi\|66048360, gi\|... - gi\|66048360\|ref\|YP_238201.1\| ribonuclease P [Pseudomonas syringae pv. syringae B728a], gi\|63259067\|g...	126.0	[0..11]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDFSREKR LLTPRHFKAV FDSPTGKVPG KNLLILAREN GLDHPRLGLV IGKKSVKLAV  60
   61 QRNRLKRLMR DSFRLNQQLL AGLDIVIVAR KGLGEIENPE LHQHFGKLWK RLARSRPTPA 120
  121 VTANSAGVDS QDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.045757
Match:	1a6fA
Description:	RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tRNA-specific ribonuclease activity	6.1454778021122	bayes_pls_golite062009
ribonuclease P activity	5.34408239201797	bayes_pls_golite062009
structural constituent of ribosome	3.49304472389303	bayes_pls_golite062009
RNA binding	2.94550290381601	bayes_pls_golite062009
structural molecule activity	2.91017901273919	bayes_pls_golite062009
3'-5'-exoribonuclease activity	2.16830676862423	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.94887328847363	bayes_pls_golite062009
exoribonuclease activity	1.90081280972069	bayes_pls_golite062009
mRNA binding	1.42024615739664	bayes_pls_golite062009
ribonuclease activity	1.31550811238109	bayes_pls_golite062009
transcription regulator activity	1.20748032530392	bayes_pls_golite062009
nucleic acid binding	1.05662964529454	bayes_pls_golite062009
binding	0.907487229190259	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
DNA binding	0.828609700556836	bayes_pls_golite062009
nuclease activity	0.69721312877891	bayes_pls_golite062009
3'-5' exonuclease activity	0.477960254167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: