YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16123507, gi\|...
Organism:	Yersinia pestis CO92
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16123507, gi|....

Description	E-value	Query Range	Subject Range
PIMT_PHOLL - Protein-L-isoaspartate O-methyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM ... PIMT_PHOLL - Protein-L-isoaspartate O-methyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=pcm PE=3 ...	2.0E-39	[1..208]	[1..208]
PIMT_ERWCT - Protein-L-isoaspartate O-methyltransferase OS=Erwinia carotovora subsp. atroseptica GN=pcm PE=3 SV=1 PIMT_PECAS - Protein-L-isoaspartate O-methyltransferase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC B...	5.0E-39	[1..208]	[1..208]
PIMT_SHISS - Protein-L-isoaspartate O-methyltransferase OS=Shigella sonnei (strain Ss046) GN=pcm PE=3 SV=1	5.0E-39	[1..208]	[1..208]
gi\|77976006 - gi\|77976006\|ref\|ZP_00831539.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Yersinia f...	7.0E-39	[1..208]	[1..208]
PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis GN=pcm PE=3 SV=1 gi\|205338108, gi... - gi\|205338108\|gb\|EDZ24872.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|205328772, gi... - gi\|205328772\|gb\|EDZ15536.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|167550221, gi... - gi\|205324765\|gb\|EDZ12604.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... PIMT_SALPB - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium GN=pcm PE=3 SV=1 PIMT_SALPB - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis GN=pcm PE=3 SV=1 PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... PIMT_SALEP - Protein-L-isoaspartate O-methyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=pcm PE=... PIMT_SALG2 - Protein-L-isoaspartate O-methyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204928018, gi... - gi\|204928018\|ref\|ZP_03219218.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|200388613, gi... - gi\|200388613\|ref\|ZP_03215225.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALPC - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=pcm PE=3 SV... PIMT_SALNS - Protein-L-isoaspartate O-methyltransferase OS=Salmonella newport (strain SL254) GN=pcm PE=3 SV=1 gi\|205342874, gi... - gi\|205342874\|gb\|EDZ29638.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|195633485, gi... - gi\|195633485\|gb\|EDX51899.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... gi\|168261944, gi... - gi\|205349120\|gb\|EDZ35751.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... PIMT_SALDC - Protein-L-isoaspartate O-methyltransferase OS=Salmonella dublin (strain CT_02021853) GN=pcm PE=3 SV=... PIMT_SALCH - Protein-L-isoaspartate O-methyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=pcm PE=3 SV... gi\|197262822, gi... - gi\|197262822\|ref\|ZP_03162896.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALA4 - Protein-L-isoaspartate O-methyltransferase OS=Salmonella agona (strain SL483) GN=pcm PE=3 SV=1 PIMT_SALHS - Protein-L-isoaspartate O-methyltransferase OS=Salmonella heidelberg (strain SL476) GN=pcm PE=3 SV=1 PIMT_SALTY - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhimurium GN=pcm PE=3 SV=1 lcl\|NC_016856.1_... - [gene=pcm] [protein=protein-L-isoaspartate O-methyltransferase] [protein_id=YP_005239038.1] [locatio... gi\|238909695 - gi\|238909695\|ref\|ZP_04653532.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs...	7.0E-39	[1..208]	[1..208]
PIMT_ECOBW - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=pcm... EG10689 - L-isoaspartate protein carboxylmethyltransferase type II / Protein-L-isoaspartate O-methyltransferas... PIMT_ECO8A - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O8 (strain IAI1) GN=pcm PE=3 SV=1 PIMT_ECO55 - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=pcm PE=3 SV=... PIMT_ECOLU - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) G... PIMT_ECOLI - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein-beta-aspartate methyltransferase) ... sp\|B7UHG2\|PIMT_ECO27 - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=p... gi\|30064100, gi\|... - gi\|30064100\|ref\|NP_838271.1\| protein-L-isoaspartate O-methyltransferase [Shigella flexneri 2a str. 2... PIMT_ECO57 - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O157:H7 GN=pcm PE=3 SV=2 EG10689 - L-isoaspartate protein carboxylmethyltransferase type II / Protein-L-isoaspartate O-methyltransferas... gi\|195939456 - gi\|195939456\|ref\|ZP_03084838.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7... gi\|15803260, gi\|... - gi\|15803260\|ref\|NP_289292.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 ED... gi\|208726418, gi... - gi\|208806617\|ref\|ZP_03248954.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7... gi\|208734244, gi... - gi\|208812967\|ref\|ZP_03254296.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7... gi\|208739786, gi... - gi\|208819663\|ref\|ZP_03259983.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7... PIMT_ECO5E - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=pcm... PIMT_ECOSE - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain SE11) GN=pcm PE=3 SV=1 PIMT_ECO27 - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=p... gi\|217319204, gi... - gi\|217326837\|ref\|ZP_03442920.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7... gi\|254594083, gi... - gi\|254794683\|ref\|YP_003079520.1\| L-isoaspartate protein carboxylmethyltransferase type II [Escherich... gi\|253974575, gi... - gi\|254162674\|ref\|YP_003045782.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli B str.... gi\|226839409, gi... - gi\|254037785\|ref\|ZP_04871843.1\| L-isoaspartate O-methyltransferase [Escherichia sp. 1_1_43], gi\|2268... gi\|254289435, gi... - gi\|254289435\|ref\|YP_003055183.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli BL21(D... gi\|242378298, gi... - gi\|251786025\|ref\|YP_003000329.1\| hypothetical protein B21_02558 [Escherichia coli BL21], gi\|24237829... PIMT_ECOSM - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pcm PE=3 ... PIMT_ECOLC - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks... PIMT_ECODH - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=pcm PE=3 SV=1 gi\|168749930, gi... - gi\|188015802\|gb\|EDU53924.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|189357286, gi... - gi\|189357286\|gb\|EDU75705.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|189366891, gi... - gi\|189366891\|gb\|EDU85307.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|168768837, gi... - gi\|189362008\|gb\|EDU80427.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|168774722, gi... - gi\|187769654\|gb\|EDU33498.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|168778728, gi... - gi\|189003215\|gb\|EDU72201.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|168787999, gi... - gi\|189372207\|gb\|EDU90623.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|168800176, gi... - gi\|189377519\|gb\|EDU95935.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 str... gi\|124529898, gi... - gi\|124529898\|ref\|ZP_01700742.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli B], gi\|... PIMT_SHIBS - Protein-L-isoaspartate O-methyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=pcm PE=3 ... gi\|89109530, gi\|... - gi\|89109530\|ref\|AP_003310.1\| L-isoaspartate protein carboxylmethyltransferase type II [Escherichia c... gi\|75210950, gi\|... - gi\|75210950\|ref\|ZP_00711074.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... gi\|13363068, gi\|... - gi\|15832851\|ref\|NP_311624.1\| protein-L-isoaspartate O-methyltransferase [Escherichia coli O157:H7 st... gi\|75230046, gi\|... - gi\|75230046\|ref\|ZP_00716556.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... PIMT_SHIF8 - Protein-L-isoaspartate O-methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=pcm PE=... PIMT_ECO24 - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=p... PIMT_ECOHS - Protein-L-isoaspartate O-methyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=pcm PE=3 SV=1 gi\|188494693, gi... - gi\|75512346\|ref\|ZP_00734898.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... PIMT_SHIDS - Protein-L-isoaspartate O-methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pcm ... gi\|75235658, gi\|... - gi\|75235658\|ref\|ZP_00719832.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... gi\|193064988, gi... - gi\|75256949\|ref\|ZP_00728525.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... gi\|83585598, gi\|... - gi\|83585598\|ref\|ZP_00924241.1\| COG2518: Protein-L-isoaspartate carboxylmethyltransferase [Escherichi... PIMT_SHIB3 - Protein-L-isoaspartate O-methyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS51...	1.0E-38	[1..208]	[1..208]
gi\|91204215 - gi\|91204215\|emb\|CAJ71868.1\| strongly similar to protein-L-isoaspartate O-methyltransferase [Candidat...	2.0E-38	[4..205]	[40..244]
gi\|68271863 - gi\|68271863\|gb\|AAY89239.1\| protein isoaspartate methyltransferase [Escherichia coli]	2.0E-38	[1..208]	[1..208]
PIMT_VIBTL - Protein-L-isoaspartate O-methyltransferase OS=Vibrio tasmaniensis (strain LGP32) GN=pcm PE=3 SV=1 gi\|86146343, gi\|... - gi\|86146343\|ref\|ZP_01064667.1\| protein-L-isoaspartate O-methyltransferase [Vibrio sp. MED222], gi\|85...	2.0E-38	[1..208]	[1..208]
gi\|214003234 - gi\|214003234\|ref\|ZP_03413969.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALPA - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=... gi\|213859419 - gi\|213859419\|ref\|ZP_03385123.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|213648319 - gi\|213648319\|ref\|ZP_03378372.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|16761698 - gi\|16761698\|ref\|NP_457315.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. ... PIMT_SALSV - Protein-L-isoaspartate O-methyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=pcm PE=... gi\|168235965, gi... - gi\|197290751\|gb\|EDY30105.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. e... PIMT_SALTI - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhi GN=pcm PE=3 SV=1 gi\|29143182, gi\|... - gi\|29143182\|ref\|NP_806524.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subsp. ... gi\|213580997 - gi\|213580997\|ref\|ZP_03362823.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|213425675 - gi\|213425675\|ref\|ZP_03358425.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... gi\|213052389 - gi\|213052389\|ref\|ZP_03345267.1\| protein-L-isoaspartate O-methyltransferase [Salmonella enterica subs... PIMT_SALPK - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=pcm PE=3 ... PIMT_SALTI - Protein-L-isoaspartate O-methyltransferase OS=Salmonella typhi GN=pcm PE=3 SV=1 PIMT_SALPA - Protein-L-isoaspartate O-methyltransferase OS=Salmonella paratyphi A GN=pcm PE=3 SV=1	2.0E-38	[1..208]	[1..208]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKRMQTLL MQLRQQGIHD ERLLQAIEAV PRERFVDEAL AHKAYENTAL PIGAGQTISQ  60
   61 PYMVARMTEL LQLTPTSRVL EIGTGSGYQT AILAHLVDHV CSVERIKGLQ WQAKRRLKQL 120
  121 DLHNVSTRHG DGWLGWQSRG PFDAIIVTAA PPEIPDALLE QLDEGGILVL PVGEQFQTLK 180
  181 YVQRRNNEYH IETVEAVRFV PLVKGELA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1jg1A
Description:	Protein-L-isoaspartyl O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein methyltransferase activity	5.03267617653315	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	4.4632173842967	bayes_pls_golite062009
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
N-methyltransferase activity	4.07806017452628	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
histone methyltransferase activity	3.97658336148086	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	3.26663548517117	bayes_pls_golite062009
arginine N-methyltransferase activity	3.26663548517117	bayes_pls_golite062009
transferase activity	2.926540904444	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	2.86617323549909	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	2.48017990451667	bayes_pls_golite062009
O-methyltransferase activity	2.46301422147246	bayes_pls_golite062009
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.27866575945018	bayes_pls_golite062009
DNA-methyltransferase activity	2.18991764495147	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	1.91133457052099	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	1.69391860928068	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity	1.15089820497406	bayes_pls_golite062009
DNA binding	1.11249468705987	bayes_pls_golite062009
transcription regulator activity	1.08316818833182	bayes_pls_golite062009
binding	0.976078016260105	bayes_pls_golite062009
nucleic acid binding	0.908932475461063	bayes_pls_golite062009
RNA methyltransferase activity	0.817509452491588	bayes_pls_golite062009
thiopurine S-methyltransferase activity	0.74333485845978	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
histone-lysine N-methyltransferase activity	0.469870476227704	bayes_pls_golite062009
rRNA methyltransferase activity	0.230719796976667	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: