YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45435719, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45435719, gi|....

Description	E-value	Query Range	Subject Range
ZITB_YERPS - Zinc transporter zitB OS=Yersinia pseudotuberculosis GN=zitB PE=3 SV=1 ZITB_YERPS - Zinc transporter ZitB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zitB PE=3 SV=1	5.0E-69	[1..306]	[1..306]
gi\|238785693, gi... - gi\|77956875\|ref\|ZP_00820950.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia bercovieri ATCC 4...	3.0E-67	[1..302]	[1..302]
gi\|238798991, gi... - gi\|77960616\|ref\|ZP_00824480.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia mollaretii ATCC 4...	3.0E-67	[1..301]	[1..301]
gi\|238793902, gi... - gi\|77976571\|ref\|ZP_00832053.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia intermedia ATCC 2...	2.0E-66	[1..300]	[1..300]
gi\|77973953 - gi\|77973953\|ref\|ZP_00829497.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia frederiksenii ATC...	2.0E-65	[1..304]	[1..304]
gi\|213620884 - gi\|213620884\|ref\|ZP_03373667.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213649742 - gi\|213649742\|ref\|ZP_03379795.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213854580 - gi\|213854580\|ref\|ZP_03382820.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|214002834 - gi\|214002834\|ref\|ZP_03413569.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213163246 - gi\|213163246\|ref\|ZP_03348956.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213420141 - gi\|213420141\|ref\|ZP_03353207.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213427705 - gi\|213427705\|ref\|ZP_03360455.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|16759692 - gi\|16759692\|ref\|NP_455309.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar Typh... ZITB_SALTI - Zinc transporter ZitB OS=Salmonella typhi GN=zitB PE=3 SV=1 ZITB_SALTI - Zinc transporter zitB OS=Salmonella typhi GN=zitB PE=3 SV=1 gi\|29142535, gi\|... - gi\|29142535\|ref\|NP_805877.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar Typh...	3.0E-63	[1..309]	[1..312]
gi\|74311270, gi\|... - gi\|74311270\|ref\|YP_309689.1\| zinc transporter ZitB [Shigella sonnei Ss046], gi\|73854747\|gb\|AAZ87454....	4.0E-63	[10..299]	[15..304]
gi\|187429855, gi... - gi\|75175252\|ref\|ZP_00695562.1\| COG1230: Co/Zn/Cd efflux system component [Shigella boydii BS512], gi...	4.0E-63	[10..299]	[15..304]
gi\|21112315, gi\|... - gi\|21230722\|ref\|NP_636639.1\| cobalt-zinc-cadmium resistance protein [Xanthomonas campestris pv. camp... gi\|167734193, gi... - gi\|188992433\|ref\|YP_001904443.1\| cobalt-zinc-cadmium efflux permease [Xanthomonas campestris pv. cam... gi\|66574614, gi\|... - gi\|66769282\|ref\|YP_244044.1\| cobalt-zinc-cadmium resistance protein [Xanthomonas campestris pv. camp...	1.0E-62	[1..307]	[1..308]
gi\|114539179, gi... - gi\|114704394\|ref\|ZP_01437302.1\| cation efflux system protein [Fulvimarina pelagi HTCC2506], gi\|11453...	3.0E-62	[2..312]	[12..326]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTIFSQD SNSKRLLIAF AITTLFMVTE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSQRKP DPRHTFGYLR LTTLAAFVNA AALLLIVILI VWEAVHRFFS PHEVMGTPML 120
  121 IIAIAGLLAN IFCFWILHKG EEEKNINVRA AALHVLSDLL GSVGAMIAAI VILTTGWTPI 180
  181 DPILSVLVSV LILRSAWRLL KESFHELLEG APQEIDINKL RKDLCTNIYE VRNIHHVHLW 240
  241 QVGEQRLMTL HAQVIPPLDH DALLQRIQDY LLHHYRISHA TVQMEYQHCG TPDCGINQAA 300
  301 PADGHHRHHH HE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	6.3253503604398	bayes_pls_golite062009
ion transmembrane transporter activity	6.22189384650962	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.82185991246167	bayes_pls_golite062009
transporter activity	4.27173462293249	bayes_pls_golite062009
transmembrane transporter activity	4.18558383943492	bayes_pls_golite062009
substrate-specific transporter activity	3.94511592355578	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.43294134632841	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	2.32644140472297	bayes_pls_golite062009
efflux transmembrane transporter activity	1.98656970252979	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.95281540802467	bayes_pls_golite062009
cation channel activity	1.55011961058299	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.31663166812163	bayes_pls_golite062009
ion channel activity	1.01093555209783	bayes_pls_golite062009
passive transmembrane transporter activity	0.963824080292546	bayes_pls_golite062009
channel activity	0.963824080292546	bayes_pls_golite062009
substrate-specific channel activity	0.948079854416241	bayes_pls_golite062009
binding	0.812276444952942	bayes_pls_golite062009
cadmium ion transmembrane transporter activity	0.661906409169955	bayes_pls_golite062009
active transmembrane transporter activity	0.490905558612378	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.376948884172728	bayes_pls_golite062009
protein binding	0.0921963177320718	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: