YRC Public Data Repository - Protein Structure Prediction

Protein:	SURA_YERPS
Organism:	Yersinia pseudotuberculosis IP 32953
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SURA_YERPS.

Description	E-value	Query Range	Subject Range
gi\|77976135, gi\|... - gi\|77976135\|ref\|ZP_00831668.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia frederikse...	5.0E-95	[1..434]	[1..434]
gi\|77959759, gi\|... - gi\|77959759\|ref\|ZP_00823776.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia bercovieri...	5.0E-94	[1..434]	[1..434]
gi\|77976651, gi\|... - gi\|77976651\|ref\|ZP_00832128.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia intermedia...	1.0E-93	[1..434]	[1..434]
gi\|77961918, gi\|... - gi\|77961918\|ref\|ZP_00825746.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia mollaretii...	3.0E-93	[1..434]	[1..434]
SURA_SALCH - Chaperone SurA OS=Salmonella choleraesuis (strain SC-B67) GN=surA PE=3 SV=1 SURA_SALCH - Chaperone surA OS=Salmonella choleraesuis GN=surA PE=3 SV=1 SURA_SALCH - Chaperone surA OS=Salmonella choleraesuis GN=surA PE=3 SV=1	4.0E-93	[1..425]	[1..425]
gi\|167401555, gi... - gi\|167401555\|ref\|ZP_02307049.1\| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... SURA_YERPA - Chaperone SurA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=surA PE=3 SV=1	9.0E-93	[1..434]	[1..434]
gi\|162352906, gi... - gi\|77634657\|ref\|ZP_00796753.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Yersinia pestis Ang...	2.0E-92	[1..434]	[1..434]
SURA_PHOLL - Chaperone SurA OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) G... SURA_PHOLL - Chaperone surA OS=Photorhabdus luminescens subsp. laumondii GN=surA PE=3 SV=1	2.0E-92	[1..434]	[1..432]
SURA_SALTI - Chaperone surA OS=Salmonella typhi GN=surA PE=3 SV=1 gi\|224466461, gi... - gi\|224581934\|ref\|YP_002635732.1\| survival protein SurA precursor [Salmonella enterica subsp. enteric... gi\|214001247 - gi\|214001247\|ref\|ZP_03411982.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp.... gi\|204926901, gi... - gi\|204926901\|ref\|ZP_03218103.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enter... gi\|199603814, gi... - gi\|200386716\|ref\|ZP_03213328.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enter... gi\|198244102, gi... - gi\|198244102\|ref\|YP_002214044.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella ente... gi\|197092775, gi... - gi\|197361300\|ref\|YP_002140935.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp... gi\|213648902 - gi\|213648902\|ref\|ZP_03378955.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp.... SURA_SALTI - Chaperone SurA OS=Salmonella typhi GN=surA PE=3 SV=1 gi\|213427535 - gi\|213427535\|ref\|ZP_03360285.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp.... gi\|206707408, gi... - gi\|207855605\|ref\|YP_002242256.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp... gi\|205351432, gi... - gi\|205351432\|ref\|YP_002225233.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=surA] [protein=peptidyl-prolyl cis-trans isomerase SurA] [protein_id=YP_005235744.1] [location... SURA_SALPA - Chaperone SurA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=surA PE=3 SV=1 gi\|16759087 - gi\|16759087\|ref\|NP_454704.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. en... gi\|194409928, gi... - gi\|194451624\|ref\|YP_002044060.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp... gi\|194444526, gi... - gi\|194444526\|ref\|YP_002039322.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella ente... SURA_SALTY - Chaperone SurA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=surA PE=3 SV=1 gi\|168820926, gi... - gi\|205342524\|gb\|EDZ29288.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... gi\|29136261, gi\|... - gi\|29140637\|ref\|NP_803979.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. en... gi\|168464364, gi... - gi\|195632865\|gb\|EDX51319.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... gi\|197263512, gi... - gi\|197263512\|ref\|ZP_03163586.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enter... gi\|197248833, gi... - gi\|197248833\|ref\|YP_002145076.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella ente... gi\|194736155, gi... - gi\|194736155\|ref\|YP_002113109.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella ente... gi\|194455393, gi... - gi\|194469029\|ref\|ZP_03075013.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enter... gi\|205324462, gi... - gi\|205324462\|gb\|EDZ12301.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... gi\|238911150 - gi\|238911150\|ref\|ZP_04654987.1\| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp.... SURA_SALTY - Chaperone surA OS=Salmonella typhimurium GN=surA PE=3 SV=1 gi\|205337413, gi... - gi\|205337413\|gb\|EDZ24177.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... gi\|197291654, gi... - gi\|197291654\|gb\|EDY31004.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... SURA_SALTY - Chaperone surA OS=Salmonella typhimurium GN=surA PE=3 SV=1 gi\|205335129, gi... - gi\|205335129\|gb\|EDZ21893.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ... SURA_SALPA - Chaperone surA OS=Salmonella paratyphi A GN=surA PE=3 SV=1 gi\|205331363, gi... - gi\|205331363\|gb\|EDZ18127.1\| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica ...	1.0E-87	[1..425]	[1..425]
gi\|66047852, gi\|... - gi\|66047852\|ref\|YP_237693.1\| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv....	2.0E-87	[4..434]	[11..442]

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Predicted Domain #1

Region A:
Residues: [1-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNWRTLILG LVICANTAFA APQEVDKVAA VVDNGVVLQS DIDGLLQSVK MNAQQSGQQV  60
   61 PDDSTLRHQI LERLIMDNIQ LQMAKKMGIT ITDQALDKAI ADIAAQNRMT LAQMRSRLAA 120
  121 DGLSYDTYRE QIRKEMLTSE VRNNEVRRRI TILPQEVESL AKQMGNQVSG DTELNLSHIL 180
  181 IPLPENPTQQ QVDQAEDLAN KLVADIKGGA DFGKLAIANS ADSQALKGGQ MGWGKLQELP 240
  241 SLFAERLQSA HKGEIVGPIR SGVGFHILKV NDMRGADQTI SVTEVNARHI LLKPSPMMTD 300
  301 EQARAKLEAA AAEIKSGKTS FATIAKEISQ DPGSAMQGGE LGWASPDIYD PAFRDALMKL 360
  361 KKGEISAPVH SSFGWHLIQL VDTRQVDKTD AAQKERAYRM LFNRKFAEEA QTWMQEQRAA 420
  421 AYVKILDGSN AQPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.69897
Match:	1m5yA
Description:	Porin chaperone SurA, peptide-binding domain; Porin chaperone SurA, PPIase domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	4.4182664267098	bayes_pls_golite062009
cis-trans isomerase activity	4.33661522951196	bayes_pls_golite062009
isomerase activity	2.83057106437196	bayes_pls_golite062009
macrolide binding	1.34183721806994	bayes_pls_golite062009
catalytic activity	1.25572252987503	bayes_pls_golite062009
FK506 binding	1.11705415888427	bayes_pls_golite062009
binding	0.863342313564958	bayes_pls_golite062009
transcription regulator activity	0.623063015282266	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: