YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29140437, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29140437, gi|....

Description	E-value	Query Range	Subject Range
gi\|62182937, gi\|... - gi\|62182937\|ref\|YP_219354.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar Ch...	4.0E-54	[1..390]	[1..390]
gi\|214000641 - gi\|214000641\|ref\|ZP_03411376.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar... gi\|213864774 - gi\|213864774\|ref\|ZP_03386893.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar... gi\|213428377 - gi\|213428377\|ref\|ZP_03361127.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar... gi\|213052217 - gi\|213052217\|ref\|ZP_03345095.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar... gi\|197365220, gi... - gi\|197365220\|ref\|YP_002144857.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serova... gi\|56130553, gi\|... - gi\|56416296\|ref\|YP_153371.1\| isoaspartyl dipeptidase [Salmonella enterica subsp. enterica serovar Pa...	1.0E-53	[1..390]	[1..390]
gi\|16423078, gi\|... - gi\|16767756\|ref\|NP_463371.1\| isoaspartyl dipeptidase [Salmonella typhimurium LT2], gi\|16423078\|gb\|AA... gi\|197242064, gi... - gi\|197263809\|ref\|ZP_03163883.1\| beta-aspartyl peptidase [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=iadA] [protein=isoaspartyl dipeptidase] [protein_id=YP_005240846.1] [location=complement(47789... gi\|205330377, gi... - gi\|205330377\|gb\|EDZ17141.1\| beta-aspartyl peptidase [Salmonella enterica subsp. enterica serovar 4,[...	1.0E-53	[1..390]	[1..390]
gi\|194426563, gi... - gi\|75212111\|ref\|ZP_00712151.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Escherichia col...	2.0E-49	[1..390]	[1..390]
gi\|26111649, gi\|... - gi\|26251216\|ref\|NP_757256.1\| isoaspartyl dipeptidase [Escherichia coli CFT073], gi\|26111649\|gb\|AAN83... gi\|227838011, gi... - gi\|227885182\|ref\|ZP_04002987.1\| isoaspartyl dipeptidase [Escherichia coli 83972], gi\|227838011\|gb\|EE...	2.0E-49	[1..390]	[1..390]
gi\|187732230, gi... - gi\|75179389\|ref\|ZP_00699393.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Shigella boydii... gi\|82546675, gi\|... - gi\|82546675\|ref\|YP_410622.1\| isoaspartyl dipeptidase [Shigella boydii Sb227], gi\|81248086\|gb\|ABB6879...	2.0E-49	[1..390]	[1..390]
gi\|254037352, gi... - gi\|254037352\|ref\|ZP_04871429.1\| isoaspartyl dipeptidase [Escherichia sp. 1_1_43], gi\|226840458\|gb\|EE... gi\|226901986, gi... - gi\|237704074\|ref\|ZP_04534555.1\| isoaspartyl dipeptidase [Escherichia sp. 3_2_53FAA], gi\|226901986\|gb... gi\|191167146, gi... - gi\|75229725\|ref\|ZP_00716258.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Escherichia col... gi\|75189047, gi\|... - gi\|75189047\|ref\|ZP_00702314.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Escherichia col... gi\|194423310, gi... - gi\|83586647\|ref\|ZP_00925279.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Escherichia col...	3.0E-49	[1..390]	[1..390]
gi\|15834540, gi\|... - gi\|15834540\|ref\|NP_313313.1\| isoaspartyl dipeptidase [Escherichia coli O157:H7], gi\|13364764\|dbj\|BAB... gi\|209749230, gi... - pir\|\|C86131 isoaspartyl dipeptidase [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|15804904, gi\|... - gi\|15804904\|ref\|NP_290945.1\| isoaspartyl dipeptidase [Escherichia coli O157:H7 EDL933], gi\|12519339\|... gi\|208813050, gi... - gi\|208813050\|ref\|ZP_03254379.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|208725617, gi... - gi\|208805816\|ref\|ZP_03248153.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|195937340 - gi\|195937340\|ref\|ZP_03082722.1\| isoaspartyl dipeptidase [Escherichia coli O157:H7 str. EC4024] gi\|189379561, gi... - gi\|189379561\|gb\|EDU97977.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC508], gi\|168797... gi\|217321226, gi... - gi\|217325005\|ref\|ZP_03441089.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|209400383, gi... - gi\|209400383\|ref\|YP_002273854.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|208820336, gi... - gi\|208820336\|ref\|ZP_03260656.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|168760575, gi... - gi\|189368885\|gb\|EDU87301.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|189357790, gi... - gi\|189357790\|gb\|EDU76209.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|168749511, gi... - gi\|188016193\|gb\|EDU54315.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4113], gi\|16874... gi\|189374882, gi... - gi\|189374882\|gb\|EDU93298.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC869], gi\|168784... gi\|189000660, gi... - gi\|189000660\|gb\|EDU69646.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|168773961, gi... - gi\|187770291\|gb\|EDU34135.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|189363992, gi... - gi\|189363992\|gb\|EDU82411.1\| beta-aspartyl peptidase [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|15834540, gi\|... - gi\|15834540\|ref\|NP_313313.1\| isoaspartyl dipeptidase [Escherichia coli O157:H7 str. Sakai], gi\|13364... gi\|254796330, gi... - gi\|254796330\|ref\|YP_003081167.1\| isoaspartyl dipeptidase [Escherichia coli O157:H7 str. TW14359], gi...	3.0E-49	[1..390]	[1..390]
gi\|52420926 - gi\|52420926\|emb\|CAH55805.1\| isoaspartyl dipeptidase yadA [Escherichia coli] gi\|91075560, gi\|... - gi\|91213986\|ref\|YP_543972.1\| isoaspartyl dipeptidase [Escherichia coli UTI89], gi\|91075560\|gb\|ABE104... gi\|115515772, gi... - gi\|117626648\|ref\|YP_859971.1\| isoaspartyl dipeptidase [Escherichia coli APEC O1], gi\|115515772\|gb\|AB...	3.0E-49	[1..390]	[1..390]
gi\|193063711, gi... - gi\|75258409\|ref\|ZP_00729840.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Escherichia col...	4.0E-49	[1..390]	[1..390]

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Predicted Domain #1

Region A:
Residues: [1-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLSAAEFT LLQGAHLFAP EDRGICDVLL ANGKIIAVGA DIPGDIVPDC AVINLSGRML  60
   61 CPGFIDQHVH LIGGGGEAGP TTRTPEVSLS RLTEAGITTV VGLLGTDSVS RHPASLLAKT 120
  121 RALNEEGITA WMLTGAYHVP SPTITGSVEK DVALIDRVIG VKCAVSDHRS AAPGGNQLTS 180
  181 MAAESRVGGL LGGKPGVSVF HMGSSKKGLQ PLYDILENSD VPIGKLLPTH VNRSESLFEQ 240
  241 ALAFALKGGV IDITTSIPDP VAPAEGIARA VKAGVPLSRV TLSSDGNGSQ PLFDAAGNLT 300
  301 GIGVAGFESL LETLQTLVNH YGFSLTDALR PLTTSVAAFL SLDGKGEIRP GNDADLLVFS 360
  361 ADLRIEQVYA RGKRMVNEGK ACVKGTFEPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1onwA
Description:	Isoaspartyl dipeptidase; Isoaspartyl dipeptidase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.06979421893431	bayes_pls_golite062009
catalytic activity	1.70199291046899	bayes_pls_golite062009
peptidase activity	0.483675247391628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.0644988334012029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: