| Protein: | gi|29143087, gi|... |
| Organism: | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 |
| Length: | 876 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29143087, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [1..876] | [1..876] |
|
Region A: Residues: [1-466] |
1 11 21 31 41 51
| | | | | |
1 MSKSTAEIRQ AFLDFFHSKG HQVVASSSLV PNNDPTLLFT NAGMNQFKDV FLGLDKRNYS 60
61 RATTSQRCVR AGGKHNDLEN VGYTARHHTF FEMLGNFSFG DYFKHDAIQF AWELLTGENW 120
121 FALPKERLWV TVYETDDEAY EIWEKEVGIP RERIIRIGDN KGAPYASDNF WQMGDTGPCG 180
181 PCTEIFYDHG DHIWGGPPGS PEEDGDRYIE IWNIVFMQFN RQADGTMEPL PKPSVDTGMG 240
241 LERIAAVLQH VNSNYDIDLF RTLIEAVAKV TGSTDLGNKS LRVIADHIRS CAFLVADGVL 300
301 PSNENRGYVL RRIIRRAVRH GNMLGAKETF FYKLVGPLIE VMGSAGEELK RQQAQVEQVL 360
361 KTEEEQFART LERGLALLDE ELAKLQGDTL DGETAFRLYD TYGFPVDLTA DVCRERNIKV 420
421 DEAGFEAAME EQRRRAREAS GFGADYNAMI RVDSASEFKG YDHLEL
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1riqA |
| Description: | The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.89468709683036 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 7.89468709683036 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.88410036819636 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 6.00693881794242 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 2.99105702052936 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.46505535069103 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.29229136935761 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 1.72324031407565 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| transcription regulator activity | 1.47976803533584 | bayes_pls_golite062009 |
| nucleic acid binding | 1.30216701059664 | bayes_pls_golite062009 |
| DNA binding | 1.1862497958336 | bayes_pls_golite062009 |
| binding | 1.11470390774037 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 0.921492123574877 | bayes_pls_golite062009 |
| transcription repressor activity | 0.80781620905336 | bayes_pls_golite062009 |
| transcription factor activity | 0.566858624145031 | bayes_pls_golite062009 |
| RNA binding | 0.0221706730298825 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.00572514744734753 | bayes_pls_golite062009 |
|
Region A: Residues: [467-809] |
1 11 21 31 41 51
| | | | | |
1 NGKVTALFVD GKAVEAINAG QEAVVVLDQT PFYAESGGQV GDKGELKGAG FTFAVDDTQK 60
61 YGQAIGHLGK LSAGALKVGD AVQADVDEAR RARIRLNHSA THLMHAALRQ VLGTHVAQKG 120
121 SLVSDKVLRF DFSHNEAMKP SEIREVEDLV NAQIRRNLPI ETNIMDLDAA KAKGAMALFG 180
181 EKYDERVRVL SMGDFSTELC GGTHASRTGD IGLFRIISES GTAAGIRRIE AVTGEGAMAT 240
241 VHAQSDRLND IAHLLKGDSQ NLGDKVRAVL ERTRQLEKEL QQLKDQAAAQ ESANLSSKAV 300
301 DLNGVKLLVS ELAGIEPKML RTMVDDLKNQ LGSTVIVLAT VVE
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1nyqA |
| Description: | Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [810-876] |
1 11 21 31 41 51
| | | | | |
1 GKVSLIAGVS KDVTDRVKAG ELIGMVAQQV GGKGGGRPDM AQAGGTDAAA LPAALASVQG 60
61 WVSAKLQ
|
| Detection Method: | |
| Confidence: | 12.853872 |
| Match: | PF02272.10 |
| Description: | No description for PF02272.10 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.550 | 0.259 | zinc ion binding | a.156.1 | S13-like H2TH domain |
| View | Download | 0.550 | 0.154 | nucleic acid binding | a.4.1 | Homeodomain-like |
| View | Download | 0.507 | 0.035 | translation | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.618 | 0.003 | nucleic acid binding | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.510 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
