YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137015, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137015, gi|....

Description	E-value	Query Range	Subject Range
gi\|110805914, gi... - gi\|110805914\|ref\|YP_689434.1\| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401], g...	0.0	[1..334]	[16..349]
gi\|117624085, gi... - gi\|117624085\|ref\|YP_852998.1\| flagellar motor switch protein FliM [Escherichia coli APEC O1], gi\|115... gi\|124498543, gi... - gi\|124531428\|ref\|ZP_01701712.1\| flagellar motor switch protein FliM [Escherichia coli B], gi\|1244985... gi\|226900661, gi... - gi\|237705904\|ref\|ZP_04536385.1\| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA], gi\|... gi\|110343643, gi... - gi\|110642051\|ref\|YP_669781.1\| flagellar motor switch protein FliM [Escherichia coli 536], gi\|1103436... gi\|91072737, gi\|... - gi\|91211163\|ref\|YP_541149.1\| flagellar motor switch protein FliM [Escherichia coli UTI89], gi\|910727... gi\|26248214, gi\|... - gi\|26248214\|ref\|NP_754254.1\| flagellar motor switch protein FliM [Escherichia coli CFT073], gi\|26108...	0.0	[1..334]	[16..349]
gi\|56127368, gi\|... - gi\|56413111\|ref\|YP_150186.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enteric... gi\|197093514, gi... - gi\|197362037\|ref\|YP_002141674.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent...	0.0	[1..334]	[1..334]
gi\|224468052, gi... - gi\|224583525\|ref\|YP_002637323.1\| flagellar motor switch protein [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=fliM] [protein=flagellar motor switch protein FliM] [protein_id=YP_005237946.1] [location=2074... gi\|205328413, gi... - gi\|205328413\|gb\|EDZ15177.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... gi\|205322661, gi... - gi\|205322661\|gb\|EDZ10500.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... FLIM_SALTY - Flagellar motor switch protein FliM OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... gi\|161362819, gi... - gi\|161613455\|ref\|YP_001587420.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|62128184, gi\|... - gi\|62180551\|ref\|YP_216968.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enteric... gi\|238912451 - gi\|238912451\|ref\|ZP_04656288.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ente... FLIM_SALTY - Flagellar motor switch protein FliM OS=Salmonella typhimurium GN=fliM PE=1 SV=1 gi\|197939716, gi... - gi\|198245200\|ref\|YP_002215110.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|197265099, gi... - gi\|197265099\|ref\|ZP_03165173.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ente... gi\|197249640, gi... - gi\|197249640\|ref\|YP_002146047.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|194737897, gi... - gi\|194737897\|ref\|YP_002115010.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|207856511, gi... - gi\|207856511\|ref\|YP_002243162.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|205272111, gi... - gi\|205352330\|ref\|YP_002226131.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|204931068, gi... - gi\|204931068\|ref\|ZP_03221894.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ente... gi\|200389660, gi... - gi\|200389660\|ref\|ZP_03216271.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ente... gi\|168259737, gi... - gi\|205350615\|gb\|EDZ37246.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... gi\|168244827, gi... - gi\|205336350\|gb\|EDZ23114.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... gi\|197288083, gi... - gi\|197288083\|gb\|EDY27470.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... gi\|205331867, gi... - gi\|205331867\|gb\|EDZ18631.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... gi\|194409310, gi... - gi\|194451006\|ref\|YP_002046027.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|194402862, gi... - gi\|194444199\|ref\|YP_002041241.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. ent... gi\|205340670, gi... - gi\|205340670\|gb\|EDZ27434.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica... FLIM_SALTY - Flagellar motor switch protein fliM OS=Salmonella typhimurium GN=fliM PE=3 SV=1 gi\|195634275, gi... - gi\|195634275\|gb\|EDX52627.1\| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica...	0.0	[1..334]	[1..334]
gi\|30063384, gi\|... - gi\|30063384\|ref\|NP_837555.1\| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T], ... gi\|56480007, gi\|... - gi\|56480007\|ref\|NP_707830.2\| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301], gi...	0.0	[1..334]	[1..334]
gi\|218695550, gi... - gi\|218695550\|ref\|YP_002403217.1\| flagellar motor switch protein FliM [Escherichia coli 55989], gi\|21... gi\|218427504, gi... - gi\|218689940\|ref\|YP_002398152.1\| flagellar motor switch protein FliM [Escherichia coli ED1a], gi\|218... gi\|218432535, gi... - gi\|218705438\|ref\|YP_002412957.1\| flagellar motor switch protein FliM [Escherichia coli UMN026], gi\|2... gi\|218699494, gi... - gi\|218699494\|ref\|YP_002407123.1\| flagellar motor switch protein FliM [Escherichia coli IAI39], gi\|21... gi\|208818778, gi... - gi\|208818778\|ref\|ZP_03259098.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. E... gi\|208730872, gi... - gi\|208816529\|ref\|ZP_03257649.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. E... gi\|209919367, gi... - gi\|209919367\|ref\|YP_002293451.1\| flagellar motor switch protein FliM [Escherichia coli SE11], gi\|209... gi\|209396357, gi... - gi\|209396357\|ref\|YP_002271061.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. ... gi\|217317956, gi... - gi\|217328609\|ref\|ZP_03444690.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. T... gi\|215265217, gi... - gi\|215487145\|ref\|YP_002329576.1\| flagellar motor switch protein FliM [Escherichia coli O127:H6 str. ... gi\|218558802, gi... - gi\|218558802\|ref\|YP_002391715.1\| flagellar motor switch protein FliM [Escherichia coli S88], gi\|2183... gi\|218554525, gi... - gi\|218554525\|ref\|YP_002387438.1\| flagellar motor switch protein FliM [Escherichia coli IAI1], gi\|218... gi\|191168308, gi... - gi\|75228499\|ref\|ZP_00715136.1\| COG1868: Flagellar motor switch protein [Escherichia coli B7A], gi\|19... gi\|192955535, gi... - gi\|75233934\|ref\|ZP_00718387.1\| COG1868: Flagellar motor switch protein [Escherichia coli E110019], g... gi\|190906430, gi... - gi\|75239161\|ref\|ZP_00723138.1\| COG1868: Flagellar motor switch protein [Escherichia coli F11], gi\|19... gi\|75511438, gi\|... - gi\|75511438\|ref\|ZP_00734113.1\| COG1868: Flagellar motor switch protein [Escherichia coli 53638], gi\|... gi\|227837199, gi... - gi\|227885626\|ref\|ZP_04003431.1\| flagellar motor switch protein FliM [Escherichia coli 83972], gi\|227... gi\|81245004, gi\|... - gi\|82543593\|ref\|YP_407540.1\| flagellar motor switch protein FliM [Shigella boydii Sb227], gi\|8124500... gi\|254793595, gi... - gi\|254793595\|ref\|YP_003078432.1\| flagellar motor switching and energizing component [Escherichia col... gi\|194439587, gi... - gi\|83585020\|ref\|ZP_00923674.1\| COG1868: Flagellar motor switch protein [Escherichia coli 101-1], gi\|... gi\|157078944, gi... - gi\|75190963\|ref\|ZP_00704230.1\| COG1868: Flagellar motor switch protein [Escherichia coli E24377A], g... gi\|157161416, gi... - gi\|75196000\|ref\|ZP_00706070.1\| COG1868: Flagellar motor switch protein [Escherichia coli HS], gi\|157... gi\|75208812, gi\|... - gi\|75208812\|ref\|ZP_00709096.1\| COG1868: Flagellar motor switch protein [Escherichia coli B171], gi\|1... gi\|13362152, gi\|... - gi\|15831938\|ref\|NP_310711.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Saka... gi\|188999277, gi... - gi\|188999277\|gb\|EDU68263.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC407... gi\|168777372, gi... - gi\|187767405\|gb\|EDU31249.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC419... gi\|168802292, gi... - gi\|189375729\|gb\|EDU94145.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508... gi\|189370212, gi... - gi\|189370212\|gb\|EDU88628.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869... gi\|170684212, gi... - gi\|170684212\|ref\|YP_001743300.1\| flagellar motor switch protein FliM [Escherichia coli SMS-3-5], gi\|... gi\|169754650, gi... - gi\|170019722\|ref\|YP_001724676.1\| flagellar motor switch protein FliM [Escherichia coli ATCC 8739], g... gi\|208724870, gi... - gi\|208810354\|ref\|ZP_03252230.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. E... gi\|195939251 - gi\|195939251\|ref\|ZP_03084633.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. E... gi\|209766818, gi... - pir\|\|D90964 flagellar motor switch protein FliM [imported] - Escherichia coli (strain O157:H7, subst... gi\|168758259, gi... - gi\|189354878\|gb\|EDU73297.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC440... gi\|168751874, gi... - gi\|188014186\|gb\|EDU52308.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC411... gi\|13362152, gi\|... - gi\|15831938\|ref\|NP_310711.1\| flagellar motor switch protein [Escherichia coli O157:H7], gi\|13362152\|... gi\|168771552, gi... - gi\|189359725\|gb\|EDU78144.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC448... gi\|168764429, gi... - gi\|189365559\|gb\|EDU83975.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC450...	0.0	[1..334]	[1..334]
gi\|75255539, gi\|... - gi\|75255539\|ref\|ZP_00727331.1\| COG1868: Flagellar motor switch protein [Escherichia coli E22], gi\|19...	0.0	[1..334]	[1..334]
gi\|15802380, gi\|... - gi\|15802380\|ref\|NP_288406.1\| flagellar motor switch protein FliM [Escherichia coli O157:H7 EDL933], ... gi\|25298899 - pir\|\|D85812 hypothetical protein fliM [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	0.0	[1..334]	[1..334]
EG10323 - flagellar motor switching and energizing component / Flagellar synthesis, motor switching and energi... gi\|1736611, gi\|8... - gi\|89108777\|ref\|AP_002557.1\| flagellar motor switching and energizing component [Escherichia coli st... FLIM_ECOLI - Flagellar motor switch protein fliM - Escherichia coli gi\|253773106, gi... - gi\|253773106\|ref\|YP_003035937.1\| flagellar motor switch protein FliM [Escherichia coli BL21(DE3)], g... EG10323 - flagellar motor switching and energizing component / Flagellar synthesis, motor switching and energi... gi\|238901150, gi... - gi\|238901150\|ref\|YP_002926946.1\| flagellar motor switching and energizing component [Escherichia col... gi\|169889424, gi... - gi\|170081589\|ref\|YP_001730909.1\| flagellar motor switching and energizing component [Escherichia col...	0.0	[1..334]	[1..334]
gi\|73855962, gi\|... - gi\|74312485\|ref\|YP_310904.1\| flagellar motor switch protein FliM [Shigella sonnei Ss046], gi\|7385596...	0.0	[1..334]	[1..334]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSILSQAE IDALLNGDSD TKDEPTPGIA SDSDIRPYDP NTQRRVVRER LQALEIINER  60
   61 FARQFRMGLF NLLRRSPDIT VGAIRIQPYH EFARNLPVPT NLNLIHLKPL RGTGLVVFSP 120
  121 SLVFITVDNL FGGDGRFPTK VEGREFTHTE QRVINRMLKL ALEGYSDAWK AINPLEVEYV 180
  181 RSEMQVKFTN ITTSPNDIVV NTPFHVEIGN LTGEFNICLP FSMIEPLREL LVNPPLENSR 240
  241 H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2hp7A
Description:	No description for 2hp7A was found.

Predicted Domain #2

Region A:
Residues: [242-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDQNWRDNLV RQVQHSELEL VANFADIPLR LSQILKLKPG DVLPIEKPDR IIAHVDGVPV  60
   61 LTSQYGTVNG QYALRVEHLI NPILNSLNEE QPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: