YRC Public Data Repository - Protein Structure Prediction

Protein:	SERC_ECOLI
Organism:	Escherichia coli
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SERC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89200187, gi\|... - gi\|89200187\|ref\|ZP_01178942.1\| Cysteine desulphurases, SufS [Bacillus cereus subsp. cytotoxis NVH 39...	307.0	[0..4]	[356..23]
gi\|76588976, gi\|... - gi\|76795662\|ref\|ZP_00778034.1\| Cysteine desulphurases, SufS [Thermoanaerobacter ethanolicus ATCC 332... gi\|241904453, gi... - gi\|241904453\|ref\|ZP_04789148.1\| cysteine desulfurase, SufS subfamily [Thermoanaerobacter brockii sub...	305.0	[0..4]	[359..26]
gi\|242231067, gi... - gi\|242257411\|ref\|ZP_04802277.1\| cysteine desulfurase, SufS subfamily [Thermoanaerobacter sp. X513], ... gi\|167040940, gi... - gi\|167040940\|ref\|YP_001663925.1\| SufS subfamily cysteine desulfurase [Thermoanaerobacter sp. X514], ...	305.0	[0..4]	[359..26]
gi\|76590009, gi\|... - gi\|76794681\|ref\|ZP_00777143.1\| Phosphoserine aminotransferase [Pseudoalteromonas atlantica T6c], gi\|...	303.0	[0..1]	[362..1]
gi\|47505669, gi\|... - gi\|47530521\|ref\|YP_021870.1\| aminotransferase, class V [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30265020, gi\|... - gi\|30265020\|ref\|NP_847397.1\| aminotransferase, class V [Bacillus anthracis str. Ames], gi\|30259697\|g... gi\|65316972, gi\|... - gi\|65316972\|ref\|ZP_00389931.1\| COG0520: Selenocysteine lyase [Bacillus anthracis str. A2012], ref\|NP... gi\|229268065, gi... - gi\|229603657\|ref\|YP_002869222.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0248], gi\|22926...	303.0	[0..4]	[354..23]
gi\|206745313, gi... - gi\|206976389\|ref\|ZP_03237296.1\| cysteine desulfurase SufS [Bacillus cereus H3081.97], gi\|206745313\|g... gi\|196044098, gi... - gi\|196044098\|ref\|ZP_03111335.1\| cysteine desulfurase SufS [Bacillus cereus 03BB108], gi\|196025434\|gb... gi\|49187839, gi\|... - gi\|49187839\|ref\|YP_031092.1\| aminotransferase, class V [Bacillus anthracis str. Sterne], gi\|49181766... gi\|52140552, gi\|... - gi\|52140552\|ref\|YP_086277.1\| aminotransferase, class V, cysteine desulfhydrase [Bacillus cereus E33L... gi\|225866952, gi... - gi\|225866952\|ref\|YP_002752330.1\| cysteine desulfurase SufS [Bacillus cereus 03BB102], gi\|225785964\|g... gi\|228596228, gi... - gi\|229187218\|ref\|ZP_04314363.1\| cysteine desulfurase [Bacillus cereus BGSC 6E1], gi\|228596228\|gb\|EEK... gi\|228771520, gi... - gi\|228988223\|ref\|ZP_04148320.1\| cysteine desulfurase [Bacillus thuringiensis serovar tochigiensis BG... gi\|228917608, gi... - gi\|228917608\|ref\|ZP_04081152.1\| cysteine desulfurase [Bacillus thuringiensis serovar pulsiensis BGSC... gi\|227817752, gi... - gi\|227817752\|ref\|YP_002817761.1\| cysteine desulfurase SufS [Bacillus anthracis str. CDC 684], gi\|227... gi\|254735350 - gi\|254735350\|ref\|ZP_05193058.1\| cysteine desulfurase SufS [Bacillus anthracis str. Western North Ame... gi\|254725325 - gi\|254725325\|ref\|ZP_05187108.1\| cysteine desulfurase SufS [Bacillus anthracis str. A1055] gi\|254687313 - gi\|254687313\|ref\|ZP_05151170.1\| cysteine desulfurase SufS [Bacillus anthracis str. CNEVA-9066] gi\|228584398, gi... - gi\|229199127\|ref\|ZP_04325810.1\| cysteine desulfurase [Bacillus cereus m1293], gi\|228584398\|gb\|EEK425... gi\|42784164, gi\|... - gi\|42784164\|ref\|NP_981411.1\| aminotransferase, class V [Bacillus cereus ATCC 10987], gi\|42740095\|gb\|... gi\|254761463 - gi\|254761463\|ref\|ZP_05213484.1\| cysteine desulfurase SufS [Bacillus anthracis str. Australia 94] gi\|254753121 - gi\|254753121\|ref\|ZP_05205157.1\| cysteine desulfurase SufS [Bacillus anthracis str. Vollum] gi\|254740617 - gi\|254740617\|ref\|ZP_05198308.1\| cysteine desulfurase SufS [Bacillus anthracis str. Kruger B] gi\|118480065, gi... - gi\|118480065\|ref\|YP_897216.1\| cysteine desulfurase, aminotransferase class-V [Bacillus thuringiensis... gi\|190567163, gi... - gi\|190567163\|ref\|ZP_03020078.1\| cysteine desulfurase SufS [Bacillus anthracis Tsiankovskii-I], gi\|19... gi\|172082212, gi... - gi\|177652206\|ref\|ZP_02934709.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0174], gi\|172082... gi\|170706965, gi... - gi\|170706965\|ref\|ZP_02897422.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0389], gi\|170128... gi\|170686006, gi... - gi\|170686006\|ref\|ZP_02877229.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0465], gi\|170670... gi\|167512122, gi... - gi\|167640041\|ref\|ZP_02398309.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0193], gi\|167512... gi\|167529747, gi... - gi\|167634997\|ref\|ZP_02393315.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0442], gi\|167529... gi\|164713435, gi... - gi\|165870926\|ref\|ZP_02215578.1\| cysteine desulfurase SufS [Bacillus anthracis str. A0488], gi\|164713...	303.0	[0..4]	[354..23]
gi\|20517684, gi\|... - gi\|20809014\|ref\|NP_624185.1\| selenocysteine lyase [Thermoanaerobacter tengcongensis MB4], gi\|2051768... gi\|20809014 - gi\|20809014\|ref\|NP_624185.1\| Selenocysteine lyase [Thermoanaerobacter tengcongensis MB4]	303.0	[0..4]	[359..24]
gi\|218900136, gi... - gi\|218900136\|ref\|YP_002448547.1\| cysteine desulfurase SufS [Bacillus cereus G9842], gi\|218542809\|gb\|... gi\|228910821, gi... - gi\|228910821\|ref\|ZP_04074630.1\| cysteine desulfurase [Bacillus thuringiensis IBL 200], gi\|228848772\|... gi\|228856171, gi... - gi\|228903486\|ref\|ZP_04067611.1\| cysteine desulfurase [Bacillus thuringiensis IBL 4222], gi\|228856171... gi\|228961227, gi... - gi\|228961227\|ref\|ZP_04122847.1\| cysteine desulfurase [Bacillus thuringiensis serovar pakistani str. ... gi\|218233850, gi... - gi\|218233850\|ref\|YP_002369783.1\| cysteine desulfurase SufS [Bacillus cereus B4264], gi\|218161807\|gb\|... gi\|228817483, gi... - gi\|228942149\|ref\|ZP_04104689.1\| cysteine desulfurase [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228784599, gi... - gi\|228975078\|ref\|ZP_04135637.1\| cysteine desulfurase [Bacillus thuringiensis serovar thuringiensis s... gi\|228968099, gi... - gi\|228968099\|ref\|ZP_04129104.1\| cysteine desulfurase [Bacillus thuringiensis serovar sotto str. T040... gi\|229032620, gi... - gi\|229032620\|ref\|ZP_04188584.1\| cysteine desulfurase [Bacillus cereus AH1271], gi\|228728705\|gb\|EEL79... gi\|228981718, gi... - gi\|228981718\|ref\|ZP_04142013.1\| cysteine desulfurase [Bacillus thuringiensis Bt407], gi\|228777830\|gb... gi\|229112426, gi... - gi\|229112426\|ref\|ZP_04241964.1\| cysteine desulfurase [Bacillus cereus Rock1-15], gi\|228671074\|gb\|EEL... gi\|229049673, gi... - gi\|229049673\|ref\|ZP_04194230.1\| cysteine desulfurase [Bacillus cereus AH676], gi\|228722586\|gb\|EEL739... gi\|74491798, gi\|... - gi\|75760714\|ref\|ZP_00740738.1\| Cysteine desulfurase / Selenocysteine lyase [Bacillus thuringiensis ... gi\|228630272, gi... - gi\|229153173\|ref\|ZP_04281352.1\| cysteine desulfurase [Bacillus cereus m1550], gi\|228630272\|gb\|EEK869... gi\|30023021, gi\|... - gi\|30023021\|ref\|NP_834652.1\| cysteine desulfhydrase [Bacillus cereus ATCC 14579], gi\|29898581\|gb\|AAP... gi\|229130239, gi... - gi\|229130239\|ref\|ZP_04259198.1\| cysteine desulfurase [Bacillus cereus BDRD-Cer4], gi\|228653172\|gb\|EE... gi\|228619580, gi... - gi\|229163959\|ref\|ZP_04291899.1\| cysteine desulfurase [Bacillus cereus R309803], gi\|228619580\|gb\|EEK7...	302.0	[0..4]	[354..23]
gi\|86605110, gi\|... - gi\|86605110\|ref\|YP_473873.1\| SufS family cysteine desulfurase [Synechococcus sp. JA-3-3Ab], gi\|86553... gi\|86605110 - gi\|86605110\|ref\|YP_473873.1\| cysteine desulfurase, SufS family [Cyanobacteria bacterium Yellowstone ...	301.0	[0..4]	[359..42]
gi\|229062649, gi... - gi\|229062649\|ref\|ZP_04199958.1\| cysteine desulfurase [Bacillus cereus AH603], gi\|228716619\|gb\|EEL683... gi\|228747124, gi... - gi\|229014170\|ref\|ZP_04171291.1\| cysteine desulfurase [Bacillus mycoides DSM 2048], gi\|228747124\|gb\|E... gi\|229169703, gi... - gi\|229169703\|ref\|ZP_04297403.1\| cysteine desulfurase [Bacillus cereus AH621], gi\|228613742\|gb\|EEK708... gi\|228647675, gi... - gi\|229135809\|ref\|ZP_04264579.1\| cysteine desulfurase [Bacillus cereus BDRD-ST196], gi\|228647675\|gb\|E... gi\|163864893, gi... - gi\|89206044\|ref\|ZP_01184607.1\| Cysteine desulphurases, SufS [Bacillus weihenstephanensis KBAB4], gi\|...	301.0	[0..4]	[354..23]

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Predicted Domain #1

Region A:
Residues: [1-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIFNFSSG PAMLPAEVLK QAQQELRDWN GLGTSVMEVS HRGKEFIQVA EEAEKDFRDL  60
   61 LNVPSNYKVL FCHGGGRGQF AAVPLNILGD KTTADYVDAG YWAASAIKEA KKYCTPNVFD 120
  121 AKVTVDGLRA VKPMREWQLS DNAAYMHYCP NETIDGIAID ETPDFGADVV VAADFSSTIL 180
  181 SRPIDVSRYG VIYAGAQKNI GPAGLTIVIV REDLLGKANI ACPSILDYSI LNDNGSMFNT 240
  241 PPTFAWYLSG LVFKWLKANG GVAEMDKINQ QKAELLYGVI DNSDFYRNDV AKANRSRMNV 300
  301 PFQLADSALD KLFLEESFAA GLHALKGHRV VGGMRASIYN AMPLEGVKAL TDFMVEFERR 360
  361 HG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.154902
Match:	1bjnA
Description:	Phosphoserine aminotransferase, PSAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.29878871754893	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.1692959843619	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.80372125032222	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.80372125032222	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
5-aminolevulinate synthase activity	1.42214433786345	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.81652984148807	bayes_pls_golite062009
transcription regulator activity	0.636782746250952	bayes_pls_golite062009
nucleic acid binding	0.526698053525422	bayes_pls_golite062009
DNA binding	0.516618701017633	bayes_pls_golite062009
binding	0.450641761940864	bayes_pls_golite062009
structural molecule activity	0.347975812448725	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
transcription factor activity	0.188693175079415	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: