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View Structure Prediction Details

Protein: CZCD_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CZCD_BACSU.

Description E-value Query
Range
Subject
Range
gi|1669848|gb|AA... - CzcD
gi|1669848 - gi|1669848|gb|AAB53029.1| CzcD
254.0 [0..17] [311..1]

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Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHNHNEGAN KKVLLISFIM ITGYMIIEAI GGFLTNSLAL LSDAGHMLSD SISLMVALIA  60
   61 FTLAEKKANH NKTFGYKRFE ILAAVINGAA LILISLYIIY EAIERFSNPP KVATTGMLTI 120
  121 SIIGLVVNLL VAWIMMSGGD TKNNLNIRGA YLHVISDMLG SVGAILAAIL IIFFGWGWAD 180
  181 PLASIIVAIL VLRSGYNVTK DSIHILMEGT PENIDVSDII RTIEGTEGIQ NIHDLHIWSI 240
  241 TSGLNALSCH AVVDDQLTIS ESENILRKIE HELEHKGITH VTIQMETEAH NHDNAILCQP 300
  301 KMEKQRDHHH H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 6.3253503604398 bayes_pls_golite062009
ion transmembrane transporter activity 6.22189384650962 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.82185991246167 bayes_pls_golite062009
transporter activity 4.27173462293249 bayes_pls_golite062009
transmembrane transporter activity 4.18558383943492 bayes_pls_golite062009
substrate-specific transporter activity 3.94511592355578 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.43294134632841 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.32644140472297 bayes_pls_golite062009
efflux transmembrane transporter activity 1.98656970252979 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.95281540802467 bayes_pls_golite062009
cation channel activity 1.55011961058299 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.31663166812163 bayes_pls_golite062009
binding 1.02283270169384 bayes_pls_golite062009
ion channel activity 1.01093555209783 bayes_pls_golite062009
passive transmembrane transporter activity 0.963824080292546 bayes_pls_golite062009
channel activity 0.963824080292546 bayes_pls_golite062009
substrate-specific channel activity 0.948079854416241 bayes_pls_golite062009
cadmium ion transmembrane transporter activity 0.661906409169955 bayes_pls_golite062009
active transmembrane transporter activity 0.490905558612378 bayes_pls_golite062009
iron ion transmembrane transporter activity 0.376948884172728 bayes_pls_golite062009
protein binding 0.158822109526305 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle