| Protein: | gi|50947937, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 573 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50947937, gi|....
| Description | E-value | Query Range |
Subject Range |
|
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423.0 | [0..3] | [547..4] |
|
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421.0 | [0..3] | [547..4] |
|
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419.0 | [0..3] | [547..4] |
|
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404.0 | [0..1] | [548..1] |
|
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390.0 | [0..2] | [548..3] |
|
|
383.0 | [0..26] | [547..183] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MESTCWSCGE GAVVADPDTG VLVCTSCGRI HDSGSSEFVH QSICTDNGVY DLRASSFVYH 60
61 QS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.895 | N/A | N/A | g.3.19 | Description not found. |
| View | Download | 0.809 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.806 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.796 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.792 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.759 | N/A | N/A | d.10.1 | DNA-binding domain |
| View | Download | 0.754 | N/A | N/A | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.741 | N/A | N/A | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.735 | N/A | N/A | b.40.2 | Bacterial enterotoxins |
|
Region A: Residues: [63-280] |
1 11 21 31 41 51
| | | | | |
1 QSQYRDQKLS NGVVTIASIA ARLGLSPTAA DEALAMAKSA TGGNLATQGS AFLPALASAC 60
61 AFLVARSHRL PLSLAEAAET AFCSVASLAD LVSRIASHLS LPPLPSFDYA AALERAVRSS 120
121 PSLSSAASER TEVILSQSRF LLRCASKWSL TTGRFPLPLI AALVAFAAEA NGVTSITVED 180
181 IARDISARLH TSLRRYKELV DALVRVAREL LPWGADVN
|
| Detection Method: | |
| Confidence: | 58.221849 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [281-397] |
1 11 21 31 41 51
| | | | | |
1 AKNLLLNAPV LLRLMEMRSQ SDPSEQFLES FAPDIAGIVQ ACSAVDDDES KYLQVAPQLA 60
61 SDDLDSNNSG QEGKELENFK ISEECLSSAY QNVLKRLAQL QRLGQVGKGA NRKRQRI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.514 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.408 | a.118.17 | Cullin repeat |
| View | Download | 0.372 | a.24.26 | Description not found. |
| View | Download | 0.353 | a.24.26 | Description not found. |
| View | Download | 0.339 | a.74.1 | Cyclin-like |
| View | Download | 0.339 | a.74.1 | Cyclin-like |
| View | Download | 0.273 | a.74.1 | Cyclin-like |
| View | Download | 0.262 | a.74.1 | Cyclin-like |
| View | Download | 0.226 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.224 | a.7.8 | GAT domain |
|
Region A: Residues: [398-573] |
1 11 21 31 41 51
| | | | | |
1 GGLELEPCID SLDDGWTKDM VLEDVVNIDV GFDVPPPSFA AGMKLQKKRR ARIEAAKCRI 60
61 DAIRKGPVES ENKLQAALRN EDACSPQKPA RKKRGKKRIA GSDRAMNGEL PIEMPDGPGG 120
121 EKKRRKGAPS DGIDWEDCII ELLLLHGANE EEIEQGQYRR LLDLHVFCAV SASGHK
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| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1ngmB |
| Description: | TBP-binding domain of the transcription factor IIIb Brf1 subunit |
Matching Structure (courtesy of the PDB): |
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