| Protein: | gi|50947937, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 573 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50947937, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
423.0 | [0..3] | [547..4] |
|
|
421.0 | [0..3] | [547..4] |
|
|
419.0 | [0..3] | [547..4] |
|
|
404.0 | [0..1] | [548..1] |
|
|
390.0 | [0..2] | [548..3] |
|
|
383.0 | [0..26] | [547..183] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MESTCWSCGE GAVVADPDTG VLVCTSCGRI HDSGSSEFVH QSICTDNGVY DLRASSFVYH 60
61 QS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.895 | N/A | N/A | g.3.19 | Description not found. |
|
Region A: Residues: [63-280] |
1 11 21 31 41 51
| | | | | |
1 QSQYRDQKLS NGVVTIASIA ARLGLSPTAA DEALAMAKSA TGGNLATQGS AFLPALASAC 60
61 AFLVARSHRL PLSLAEAAET AFCSVASLAD LVSRIASHLS LPPLPSFDYA AALERAVRSS 120
121 PSLSSAASER TEVILSQSRF LLRCASKWSL TTGRFPLPLI AALVAFAAEA NGVTSITVED 180
181 IARDISARLH TSLRRYKELV DALVRVAREL LPWGADVN
|
| Detection Method: | |
| Confidence: | 58.221849 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [281-397] |
1 11 21 31 41 51
| | | | | |
1 AKNLLLNAPV LLRLMEMRSQ SDPSEQFLES FAPDIAGIVQ ACSAVDDDES KYLQVAPQLA 60
61 SDDLDSNNSG QEGKELENFK ISEECLSSAY QNVLKRLAQL QRLGQVGKGA NRKRQRI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [398-573] |
1 11 21 31 41 51
| | | | | |
1 GGLELEPCID SLDDGWTKDM VLEDVVNIDV GFDVPPPSFA AGMKLQKKRR ARIEAAKCRI 60
61 DAIRKGPVES ENKLQAALRN EDACSPQKPA RKKRGKKRIA GSDRAMNGEL PIEMPDGPGG 120
121 EKKRRKGAPS DGIDWEDCII ELLLLHGANE EEIEQGQYRR LLDLHVFCAV SASGHK
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1ngmB |
| Description: | TBP-binding domain of the transcription factor IIIb Brf1 subunit |
Matching Structure (courtesy of the PDB): |
|
