YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215765881, gi...
Organism:	Oryza sativa Japonica Group
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215765881, gi....

Description	E-value	Query Range	Subject Range
gi\|66514411 - gi\|66514411\|ref\|XP_395323.2\| PREDICTED: similar to IMP4, U3 small nucleolar ribonucleoprotein, homol...	299.0	[0..1]	[292..1]
gi\|20260206, gi\|... - pir\|\|H96662 hypothetical protein T12P18.20 [imported] - Arabidopsis thaliana, gi\|21593725\|gb\|AAM656...	297.0	[0..1]	[292..1]
gi\|118777519, gi... - gi\|118777519\|ref\|XP_308117.3\| AGAP003890-PA [Anopheles gambiae str. PEST], gi\|116132694\|gb\|EAA03875....	296.0	[0..1]	[292..1]
gi\|49069886, gi\|... - gi\|71006196\|ref\|XP_757764.1\| hypothetical protein UM01617.1 [Ustilago maydis 521], ref\|XP_399232.1\| ...	295.0	[0..1]	[291..1]
gi\|157759427 - gi\|157759427\|ref\|XP_001672057.1\| Hypothetical protein CBG13507 [Caenorhabditis briggsae AF16] gi\|39587892, gi\|... - gi\|39587892\|emb\|CAE67910.1\| Hypothetical protein CBG13507 [Caenorhabditis briggsae], gi\|187028539\|em...	292.0	[0..1]	[292..1]
gi\|169146224, gi... - gi\|50540508\|ref\|NP_001002719.1\| IMP4, U3 small nucleolar ribonucleoprotein, homolog [Danio rerio], g...	292.0	[0..1]	[292..1]
gi\|91090574 - gi\|91090574\|ref\|XP_972242.1\| PREDICTED: similar to IMP4, U3 small nucleolar ribonucleoprotein, homol...	292.0	[0..1]	[292..1]
gi\|58268148, gi\|... - gi\|58268148\|ref\|XP_571230.1\| rRNA primary transcript binding protein [Cryptococcus neoformans var. n...	288.0	[0..1]	[290..1]
gi\|94469098 - gi\|94469098\|gb\|ABF18398.1\| U3 small nucleolar ribonucleoprotein component [Aedes aegypti]	288.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRNTRLRR EYLYRKSLEG KERQHYEKKR RLREALDEGK PIPTELRNEE LALRREIDLE  60
   61 DKDSAVPRSL IDDEYA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAALREPKIL LTTSRNPSAP LTQFVKELKV VFPNSQRMNR GGQVISEIVE SCRSHDITDL  60
   61 VLVHEHRGQP DGLIVCHLPF GPTAYFGLLN VVTRHDIKDR KAMGKMSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [185-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYPHLILDNF TTKTGERTAN IVKHLFPVPK PDSKRIITFA NRDDYISFRH HVYEKHGGPK  60
   61 SLDLKEVGPR FELRLYQIKR GTVDQAEAQN EFVLRPYMNT AKKQKSLGA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.78
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits